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Visualization of analysis results

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ruochiz edited this page Feb 22, 2021 · 1 revision

test

Higashi ~ logo ~ Wiki

Toggle table of contents Pages 28

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Home
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Change Log
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Citing Higashi
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Configure the parameters
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Configure the parameters for Fast Higashi
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Contact map style configuration
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Dataset selection
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Embeddings visualization
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Fast Higashi Gallery
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Fast Higashi Usage
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Higashi Requirements
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Higashi Usage
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Higashi Usage API
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Higashi vis
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Higashi vis Usage
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Input Files
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Known Issues
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List of scHi C datasets
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Navigate the analysis results
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Other components
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Output of Higashi analysis
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Output of Higashi main
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Runtime of Fast Higashi
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Runtime of Higashi
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Single cell A B compartment calling
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Single cell TAD calling
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Synchronized navigation of contact maps
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Visualization of analysis results

Higashi

Introduction
Installation

Higashi-main

Input files
Usage (CLI)
Usage (API)
Output of Higashi-main
Runtime of Higashi

Higashi-analysis (CLI only for now)

Single cell TAD calling
Single cell A/B compartment calling
Output of Higashi-analysis

Higashi-vis

Configure the Higashi-vis
Launch the service
Navigate the analysis results

Fast-Higashi

Input files
Usage (API)
[Fast-Higashi initialized Higashi (Under construction)]
Runtime of Fast-Higashi

Tutorials

Fast-Higashi Gallery
4DN sci-Hi-C (Kim et al.)
Ramani et al.

General

Known issues
Change log
FAQ
Citing Higashi
List of scHi-C datasets

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