Skip to content

Commit

Permalink
updates for v1.1
Browse files Browse the repository at this point in the history
  • Loading branch information
madeleineudell committed Jul 18, 2019
1 parent 3e68cda commit 49af5e0
Show file tree
Hide file tree
Showing 32 changed files with 577 additions and 207 deletions.
387 changes: 387 additions & 0 deletions Manifest.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,387 @@
# This file is machine-generated - editing it directly is not advised

[[Arpack]]
deps = ["BinaryProvider", "Libdl", "LinearAlgebra"]
git-tree-sha1 = "07a2c077bdd4b6d23a40342a8a108e2ee5e58ab6"
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
version = "0.3.1"

[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[BinDeps]]
deps = ["Compat", "Libdl", "SHA", "URIParser"]
git-tree-sha1 = "12093ca6cdd0ee547c39b1870e0c9c3f154d9ca9"
uuid = "9e28174c-4ba2-5203-b857-d8d62c4213ee"
version = "0.8.10"

[[BinaryProvider]]
deps = ["Libdl", "Logging", "SHA"]
git-tree-sha1 = "c7361ce8a2129f20b0e05a89f7070820cfed6648"
uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
version = "0.5.6"

[[CSV]]
deps = ["CategoricalArrays", "DataFrames", "Dates", "Mmap", "Parsers", "PooledArrays", "Profile", "Tables", "Unicode", "WeakRefStrings"]
git-tree-sha1 = "a7df9250dff3aba96436580dd6ac00d712364cab"
uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
version = "0.5.9"

[[Calculus]]
deps = ["Compat"]
git-tree-sha1 = "f60954495a7afcee4136f78d1d60350abd37a409"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
version = "0.4.1"

[[CategoricalArrays]]
deps = ["Compat", "Future", "JSON", "Missings", "Printf", "Reexport"]
git-tree-sha1 = "26601961df6afacdd16d67c1eec6cfe75e5ae9ab"
uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
version = "0.5.4"

[[CodecZlib]]
deps = ["BinaryProvider", "Libdl", "Test", "TranscodingStreams"]
git-tree-sha1 = "36bbf5374c661054d41410dc53ff752972583b9b"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.5.2"

[[CommonSubexpressions]]
deps = ["Test"]
git-tree-sha1 = "efdaf19ab11c7889334ca247ff4c9f7c322817b0"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.2.0"

[[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "84aa74986c5b9b898b0d1acaf3258741ee64754f"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "2.1.0"

[[DataFrames]]
deps = ["CategoricalArrays", "Compat", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "StatsBase", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "def266a7e5eb6f633ef4c72633d2a328b9450052"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "0.19.0"

[[DataStructures]]
deps = ["InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "0809951a1774dc724da22d26e4289bbaab77809a"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.17.0"

[[DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"

[[Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[DelimitedFiles]]
deps = ["Mmap"]
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[DiffEqDiffTools]]
deps = ["LinearAlgebra", "SparseArrays", "StaticArrays"]
git-tree-sha1 = "b992345a39b4d9681342ae795a8dacc100730182"
uuid = "01453d9d-ee7c-5054-8395-0335cb756afa"
version = "0.14.0"

[[DiffResults]]
deps = ["Compat", "StaticArrays"]
git-tree-sha1 = "34a4a1e8be7bc99bc9c611b895b5baf37a80584c"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "0.0.4"

[[DiffRules]]
deps = ["Random", "Test"]
git-tree-sha1 = "dc0869fb2f5b23466b32ea799bd82c76480167f7"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "0.0.10"

[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[EzXML]]
deps = ["BinaryProvider", "Libdl", "Printf"]
git-tree-sha1 = "724e13b7522563a18ae4a5cc4a9792ae3b0da3e6"
uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615"
version = "0.9.3"

[[FileIO]]
deps = ["Pkg"]
git-tree-sha1 = "351f001a78aa1b7ad2696e386e110b5abd071c71"
uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
version = "1.0.7"

[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "Test"]
git-tree-sha1 = "9ab8f76758cbabba8d7f103c51dce7f73fcf8e92"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.6.3"

[[ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "InteractiveUtils", "LinearAlgebra", "NaNMath", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "Test"]
git-tree-sha1 = "4c4d727f1b7e0092134fabfab6396b8945c1ea5b"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.3"

[[Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[InvertedIndices]]
deps = ["Test"]
git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc"
uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
version = "1.0.0"

[[IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.0"

[[LibGit2]]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[LineSearches]]
deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf", "Test"]
git-tree-sha1 = "54eb90e8dbe745d617c78dee1d6ae95c7f6f5779"
uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
version = "7.0.1"

[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"

[[Missings]]
deps = ["SparseArrays", "Test"]
git-tree-sha1 = "f0719736664b4358aa9ec173077d4285775f8007"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "0.4.1"

[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[Mocking]]
deps = ["Compat", "Dates"]
git-tree-sha1 = "4bf69aaf823b119b034e091e16b18311aa191663"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.5.7"

[[NLSolversBase]]
deps = ["Calculus", "DiffEqDiffTools", "DiffResults", "Distributed", "ForwardDiff", "LinearAlgebra", "Random", "SparseArrays", "Test"]
git-tree-sha1 = "0c6f0e7f2178f78239cfb75310359eed10f2cacb"
uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
version = "7.3.1"

[[NMF]]
deps = ["LinearAlgebra", "Printf", "Random", "Statistics", "StatsBase", "Test"]
git-tree-sha1 = "7292dbfbc5501f9a2ae3cd748551c5e500de5f0f"
uuid = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
version = "0.4.0"

[[NaNMath]]
deps = ["Compat"]
git-tree-sha1 = "ce3b85e484a5d4c71dd5316215069311135fa9f2"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "0.3.2"

[[Optim]]
deps = ["Calculus", "DiffEqDiffTools", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "Random", "SparseArrays", "StatsBase"]
git-tree-sha1 = "05efd63b639afdd3425909cd3af73fe9c1373cf3"
uuid = "429524aa-4258-5aef-a3af-852621145aeb"
version = "0.19.1"

[[OrderedCollections]]
deps = ["Random", "Serialization", "Test"]
git-tree-sha1 = "c4c13474d23c60d20a67b217f1d7f22a40edf8f1"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.1.0"

[[Parameters]]
deps = ["Markdown", "OrderedCollections", "REPL", "Test"]
git-tree-sha1 = "70bdbfb2bceabb15345c0b54be4544813b3444e4"
uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
version = "0.10.3"

[[Parsers]]
deps = ["Dates", "Test"]
git-tree-sha1 = "db2b35dedab3c0e46dc15996d170af07a5ab91c9"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "0.3.6"

[[Pkg]]
deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[PooledArrays]]
git-tree-sha1 = "6e8c38927cb6e9ae144f7277c753714861b27d14"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "0.5.2"

[[PositiveFactorizations]]
deps = ["LinearAlgebra", "Test"]
git-tree-sha1 = "957c3dd7c33895469760ce873082fbb6b3620641"
uuid = "85a6dd25-e78a-55b7-8502-1745935b8125"
version = "0.2.2"

[[Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[Profile]]
deps = ["Printf"]
uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"

[[RData]]
deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "TimeZones"]
git-tree-sha1 = "3b0fc2f7df61b8890502851281c1eb0d2407d6ac"
uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da"
version = "0.6.2"

[[RDatasets]]
deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport", "Test"]
git-tree-sha1 = "4d93a52b94397bf0a9477d04e7a151a688672695"
uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
version = "0.6.1"

[[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[Random]]
deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[Reexport]]
deps = ["Pkg"]
git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "0.2.0"

[[Requires]]
deps = ["Test"]
git-tree-sha1 = "f6fbf4ba64d295e146e49e021207993b6b48c7d1"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "0.5.2"

[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"

[[ScikitLearnBase]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f"
uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e"
version = "0.5.0"

[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"

[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[SortingAlgorithms]]
deps = ["DataStructures", "Random", "Test"]
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "0.3.1"

[[SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[SpecialFunctions]]
deps = ["BinDeps", "BinaryProvider", "Libdl", "Test"]
git-tree-sha1 = "0b45dc2e45ed77f445617b99ff2adf0f5b0f23ea"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "0.7.2"

[[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "db23bbf50064c582b6f2b9b043c8e7e98ea8c0c6"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "0.11.0"

[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

[[StatsBase]]
deps = ["DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
git-tree-sha1 = "2b6ca97be7ddfad5d9f16a13fe277d29f3d11c23"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.31.0"

[[TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.0"

[[Tables]]
deps = ["DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "Requires", "TableTraits", "Test"]
git-tree-sha1 = "2e5d1a0d9b574ee2ed0c1a2fe32807de022376dd"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "0.2.9"

[[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[TimeZones]]
deps = ["Dates", "EzXML", "Mocking", "Printf", "Serialization", "Unicode"]
git-tree-sha1 = "859bfc1832ea52e413c96fa5c92130516db62bdb"
uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53"
version = "0.9.1"

[[TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "a25d8e5a28c3b1b06d3859f30757d43106791919"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.4"

[[URIParser]]
deps = ["Test", "Unicode"]
git-tree-sha1 = "6ddf8244220dfda2f17539fa8c9de20d6c575b69"
uuid = "30578b45-9adc-5946-b283-645ec420af67"
version = "0.4.0"

[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[WeakRefStrings]]
deps = ["Random", "Test"]
git-tree-sha1 = "9a0bb82eede528debe631b642eeb48a631a69bc2"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "0.6.1"
Loading

0 comments on commit 49af5e0

Please sign in to comment.