Merge pull request #247 from flohump/develop

output script for disaggregation of land transitions

CHANGELOG.md

@@ -8,9 +8,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
-### added
-- **51_nitrogen** new module realization rescaled_jan21, which rescales n-related emissions with nitrogen surplus to account for lower emissions with higher NUE
-
 ### changed
 - **50_nr_soil_budget** added necessary interfaces to 50_nitrogen module
 - **runscripts** adapted to new input data and model version
@@ -22,7 +19,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### added
 - **15_food** Added the option to fade out livestock demand towards a target level in kcal/cap/day.
 - **35_natveg** Added HalfEarth scenario to protection scenarios
+- **51_nitrogen** new module realization rescaled_jan21, which rescales n-related emissions with nitrogen surplus to account for lower emissions with higher NUE
 - **56_ghg_policy** Added new scenario to emission policy
+- **scripts** added output script for disaggregation of land transitions
 
 ### changed
 - **scripts** Updated AgMIP output scripts.
@@ -191,4 +190,4 @@ First open source release of the framework. See [MAgPIE 4.0 paper](https://doi.o
 [4.0.1]: https://github.com/magpiemodel/magpie/compare/v4.0...v4.0.1
 [4.0.0]: https://github.com/magpiemodel/magpie/releases/tag/v4.0
 
-[REMIND model]: https://www.pik-potsdam.de/research/transformation-pathways/models/remind
+[REMIND model]: https://www.pik-potsdam.de/research/transformation-pathways/models/remind

scripts/output/extra/disaggregation_transitions.R

@@ -0,0 +1,125 @@
+# |  (C) 2008-2020 Potsdam Institute for Climate Impact Research (PIK)
+# |  authors, and contributors see CITATION.cff file. This file is part
+# |  of MAgPIE and licensed under AGPL-3.0-or-later. Under Section 7 of
+# |  AGPL-3.0, you are granted additional permissions described in the
+# |  MAgPIE License Exception, version 1.0 (see LICENSE file).
+# |  Contact: magpie@pik-potsdam.de
+
+# --------------------------------------------------------------
+# description: Interpolates land transitions to 0.5 degree resolution
+# comparison script: FALSE
+# ---------------------------------------------------------------
+
+#Version 1.00 - Florian Humpenoeder
+
+library(lucode2)
+library(magpie4)
+library(luscale)
+library(madrat)
+
+############################# BASIC CONFIGURATION #######################################
+land_lr_file     <- "avl_land_t.cs3"
+land_hr_file     <- "avl_land_t_0.5.mz"
+land_hr_out_file           <- "cell.land_transitions_0.5.mz"
+land_hr_share_out_file     <- "cell.land_transitions_0.5_share.mz"
+
+prev_year        <- "y1985"            #timestep before calculations in MAgPIE
+in_folder        <- "modules/10_land/input"
+
+if(!exists("source_include")) {
+  sum_spam_file    <- "0.5-to-n200_sum.spam"
+  title       <- "base_run"
+  outputdir       <- "output/SSP2_Ref_c200"
+
+  ###Define arguments that can be read from command line
+  readArgs("sum_spam_file","outputdir","title")
+}
+#########################################################################################
+
+load(paste0(outputdir, "/config.Rdata"))
+title <- cfg$title
+print(title)
+
+# Function to extract information from info.txt
+get_info <- function(file, grep_expression, sep, pattern="", replacement="") {
+  if(!file.exists(file)) return("#MISSING#")
+  file <- readLines(file, warn=FALSE)
+  tmp <- grep(grep_expression, file, value=TRUE)
+  tmp <- strsplit(tmp, sep)
+  tmp <- sapply(tmp, "[[", 2)
+  tmp <- gsub(pattern, replacement ,tmp)
+  if(all(!is.na(as.logical(tmp)))) return(as.vector(sapply(tmp, as.logical)))
+  if (all(!(regexpr("[a-zA-Z]",tmp) > 0))) {
+    tmp <- as.numeric(tmp)
+  }
+  return(tmp)
+}
+low_res       <- get_info(paste0(outputdir,"/info.txt"),"^\\* Output ?resolution:",": ")
+sum_spam_file <- paste0("0.5-to-",low_res,"_sum.spam")
+print(sum_spam_file)
+
+### Land Stock
+
+# Load input data
+gdx          <- path(outputdir,"fulldata.gdx")
+land_ini_lr  <- readGDX(gdx,"f10_land","f_land", format="first_found")[,"y1995",]
+land_lr      <- land(gdx,sum=FALSE,level="cell")
+land_ini_hr  <- read.magpie(path(in_folder,land_hr_file))[,"y1995",]
+land_ini_hr  <- land_ini_hr[,,getNames(land_lr)]
+if(any(land_ini_hr < 0)) {
+  warning(paste0("Negative values in inital high resolution dataset detected and set to 0. Check the file ",land_hr_file))
+  land_ini_hr[which(land_ini_hr < 0,arr.ind = T)] <- 0
+}
+
+# Start interpolation (use interpolate from luscale)
+print("Disaggregation Land Stock")
+land_hr <- interpolate( x          = land_lr,
+                        x_ini_lr   = land_ini_lr,
+                        x_ini_hr   = land_ini_hr,
+                        spam       = path(outputdir,sum_spam_file),
+                        prev_year  = prev_year)
+land_hr  <- land_hr[,-1,]
+
+### Land Tranitions
+
+# prepare input data
+CountryToCell   <- toolGetMapping("CountryToCellMapping.csv", type = "cell")
+land_lr <- readGDX(gdx,"ov10_lu_transitions",select = list(type="level"),react = "silent")
+if(is.null(land_lr)) stop("No land transitions available in GDX file")
+land_ini_hr <- new.magpie(CountryToCell$cell,NULL,getNames(land_lr),fill = 0)
+x  <- read.magpie(path(in_folder,land_hr_file))[,"y1995",]
+x  <- x[,,getNames(land_lr,dim=1)]
+for (i in getNames(land_lr,dim=1)) {
+  land_ini_hr[,,paste(i,i,sep=".")] <- x[,,i]  
+}
+land_ini_lr <- speed_aggregate(land_ini_hr,path(outputdir,sum_spam_file))
+getCells(land_ini_lr) <- getCells(land_lr)
+
+# Interpolate Transitions
+print("Disaggregation Land Transitions")
+land_trans_hr <- interpolate( x          = land_lr,
+                        x_ini_lr   = land_ini_lr,
+                        x_ini_hr   = land_ini_hr,
+                        spam       = path(outputdir,sum_spam_file),
+                        prev_year  = prev_year)
+land_trans_hr  <- land_trans_hr[,-1,]
+
+# Test
+test <- dimSums(land_trans_hr,dim=3.1) - land_hr
+if(max(test)>0.1||min(test)< -0.1) warning("Sum over land transitions and land stock differ, but should be equal!")
+#dimSums(land_hr[1,,],dim=c(1))[,,"crop"]
+#dimSums(land_trans_hr[1,,],dim=c(1,3.1))[,,"crop"]
+
+# Write outputs
+
+print("Write outputs cell.land")
+# write landpool
+write.magpie(land_trans_hr,path(outputdir,paste(land_hr_out_file,sep="_")),comment="unit: Mha per grid-cell")
+write.magpie(land_trans_hr,path(outputdir,paste(sub(".mz",".nc",land_hr_out_file),sep="_")),comment="unit: Mha per grid-cell", verbose=FALSE)
+
+print("Write outputs cell.land_share")
+# calculate share of land pools in terms of tatal cell size
+land_trans_hr_shr <- land_trans_hr/dimSums(land_trans_hr,dim=3)
+# write landpool shares
+write.magpie(land_trans_hr_shr,path(outputdir,paste(land_hr_share_out_file,sep="_")),comment="unit: grid-cell land area fraction")
+write.magpie(land_trans_hr_shr,path(outputdir,paste(sub(".mz",".nc",land_hr_share_out_file),sep="_")),comment="unit: grid-cell land area fraction", verbose=FALSE)