Merge pull request #421 from bodirsky/develop

updated literature

.github/pull_request_template.md

@@ -32,6 +32,7 @@
 - [ ] Self-review of my own code.
 - [ ] In case of updated cellular input tgz file in default.cfg: scenario_config.csv has been updated accordingly (rcp1p9, rcp2p6 etc)
 - [ ] For high risk runs: validation of major model indicators - Land-use, emissions, food prices, Tau.  %Delete this line in case it is not a high risk run%
+- [ ] In case of updated switches in default.cfg: made sure that all scenario definitions in scenario_config.csv are still available (or updated accordingly).
 
 ## :warning: Additional notes or warnings :warning:
 NA

CHANGELOG.md

@@ -11,7 +11,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### changed
 - **scripts** output/extra/disaggregation_BII.R adjusted BII output for primary and secondary other land
 - **59_som** Now calculates soil C for fallow
-- **inputs** updated non-food initial prices, MACCs curves, and removed suitability threshold of 0.1 in all_marginal setting
+- **inputs** updated non-food initial prices, MACCs curves, and removed suitability threshold of 0.1 in all_marginal setting  
+- **documentation** added literature
+
 
 ### added
 - **scripts* added output scripts for FSEC FSDP runs
@@ -20,9 +22,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### removed
 - **15_food** removed read-in of non-needed input file "f15_calib_factor_FAOfsupply_iso"
 
+
 ### fixed
 
 
+
 ## [4.5.0] - 2022-07-07
 
 ### changed

literature.bib

@@ -11,10 +11,42 @@ @Article{dietrich_magpie4
 }
 
 @article{bodirsky_starved_nodate,
-	title = {From starved to stuffed: {Long}-term dynamics of diets and anthropometrics.},
-	author = {Bodirsky, Benjamin Leon and Dietrich, Jan Philipp and Martinelli, Eleonora and Stenstad, Anthonia and Pradhan, Prajal and Rolinski, Susanne and Gabrysch, Sabine and Mishra, Abhijeet and Le-Mouel, Chantal and Baumstark, Lavinia and Wang, Xiaoxi and Lotze-Campen, Hermann and Popp, Alexander}
+	title = {The ongoing nutrition transition thwarts long-term targets for food security, public health and environmental protection},
+	volume = {10},
+	copyright = {2020 The Author(s)},
+	issn = {2045-2322},
+	url = {https://www.nature.com/articles/s41598-020-75213-3},
+	doi = {10.1038/s41598-020-75213-3},
+	abstract = {The nutrition transition transforms food systems globally and shapes public health and environmental change. Here we provide a global forward-looking assessment of a continued nutrition transition and its interlinked symptoms in respect to food consumption. These symptoms range from underweight and unbalanced diets to obesity, food waste and environmental pressure. We find that by 2050, 45\% (39–52\%) of the world population will be overweight and 16\% (13–20\%) obese, compared to 29\% and 9\% in 2010 respectively. The prevalence of underweight approximately halves but absolute numbers stagnate at 0.4–0.7 billion. Aligned, dietary composition shifts towards animal-source foods and empty calories, while the consumption of vegetables, fruits and nuts increases insufficiently. Population growth, ageing, increasing body mass and more wasteful consumption patterns are jointly pushing global food demand from 30 to 45 (43–47) Exajoules. Our comprehensive open dataset and model provides the interfaces necessary for integrated studies of global health, food systems, and environmental change. Achieving zero hunger, healthy diets, and a food demand compatible with environmental boundaries necessitates a coordinated redirection of the nutrition transition. Reducing household waste, animal-source foods, and overweight could synergistically address multiple symptoms at once, while eliminating underweight would not substantially increase food demand.},
+	language = {en},
+	number = {1},
+	urldate = {2020-11-18},
+	journal = {Scientific Reports},
+	author = {Bodirsky, Benjamin Leon and Dietrich, Jan Philipp and Martinelli, Eleonora and Stenstad, Antonia and Pradhan, Prajal and Gabrysch, Sabine and Mishra, Abhijeet and Weindl, Isabelle and Le Mouël, Chantal and Rolinski, Susanne and Baumstark, Lavinia and Wang, Xiaoxi and Waid, Jillian L. and Lotze-Campen, Hermann and Popp, Alexander},
+	month = nov,
+	year = {2020},
+	note = {Number: 1
+Publisher: Nature Publishing Group},
+	pages = {19778},
+	file = {Bodirsky et al. - 2020 - The ongoing nutrition transition thwarts long-term.pdf:C\:\\bbb\\PIK\\Bibliographie\\storage\\YTSW6G8R\\Bodirsky et al. - 2020 - The ongoing nutrition transition thwarts long-term.pdf:application/pdf;nutrition_transition.docx:C\:\\bbb\\PIK\\Bibliographie\\storage\\I8485S9W\\41598_2020_75213_MOESM2_ESM.docx:application/vnd.openxmlformats-officedocument.wordprocessingml.document;nutrition_transition.zip:C\:\\bbb\\PIK\\Bibliographie\\storage\\4APAXJTA\\41598_2020_75213_MOESM1_ESM.zip:application/x-zip-compressed;Snapshot:C\:\\bbb\\PIK\\Bibliographie\\storage\\FQ5MF7D2\\s41598-020-75213-3.html:text/html},
 }
 
+@article{willett_food_2019,
+	title = {Food in the {Anthropocene}: the {EAT}–{Lancet} {Commission} on healthy diets from sustainable food systems},
+	issn = {01406736},
+	shorttitle = {Food in the {Anthropocene}},
+	url = {https://linkinghub.elsevier.com/retrieve/pii/S0140673618317884},
+	doi = {10.1016/S0140-6736(18)31788-4},
+	language = {en},
+	urldate = {2019-01-18},
+	journal = {The Lancet},
+	author = {Willett, Walter and Rockström, Johan and Loken, Brent and Springmann, Marco and Lang, Tim and Vermeulen, Sonja and Garnett, Tara and Tilman, David and DeClerck, Fabrice and Wood, Amanda and Jonell, Malin and Clark, Michael and Gordon, Line J and Fanzo, Jessica and Hawkes, Corinna and Zurayk, Rami and Rivera, Juan A and De Vries, Wim and Majele Sibanda, Lindiwe and Afshin, Ashkan and Chaudhary, Abhishek and Herrero, Mario and Agustina, Rina and Branca, Francesco and Lartey, Anna and Fan, Shenggen and Crona, Beatrice and Fox, Elizabeth and Bignet, Victoria and Troell, Max and Lindahl, Therese and Singh, Sudhvir and Cornell, Sarah E and Srinath Reddy, K and Narain, Sunita and Nishtar, Sania and Murray, Christopher J L},
+	month = jan,
+	year = {2019},
+	file = {Willett et al. - 2019 - Food in the Anthropocene the EAT–Lancet Commissio.pdf:C\:\\bbb\\PIK\\Bibliographie\\storage\\2FLEBM8R\\Willett et al. - 2019 - Food in the Anthropocene the EAT–Lancet Commissio.pdf:application/pdf},
+}
+
+
 @misc{FAOSTAT,
           author = {FAOSTAT},
           title = {{FAOSTAT Database}},