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Highlights

  • Arctic Code Vault Contributor
manzt/README.md

Hi there 👋

I'm Trevor. I'm a graduate student in bioinformatics interested in data visualization and open-source software.

twitter: https://twitter.com/trevmanz

Pinned

  1. Javascript implementation of Zarr

    TypeScript 50 5

  2. Buffer compression and transformation codecs for use in Zarr.js and beyond...

    TypeScript 13

  3. A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.

    TypeScript 25 5

  4. Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Bio-Formats-compatible Zarr and OME-TIFF.

    JavaScript 64 5

  5. Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

    JavaScript 35 6

  6. An experimental plugin to lazily load multiscale whole-slide tiffs with openslide and dask.

    Python 12 2

1,061 contributions in the last year

Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mon Wed Fri

Contribution activity

February 2021

Created 2 repositories

Created a pull request in hms-dbmi/viv that received 6 comments

Support Int8, Int16, and Int32 textures

Fixes #370 more robustly.. The primary change in this PR is that we don't cast any TypedArrays unless there is no WebGL2 support. In addition, all …

+101 −72 6 comments
Opened 15 other pull requests in 7 repositories
hms-dbmi/viv
4 merged 1 closed
manzt/patch-viewer
3 merged
hms-dbmi/vizarr
2 merged
gzuidhof/zarr.js
2 merged
zarr-developers/zarr_implementations
1 merged
manzt/lzw-tiff-decoder
1 merged
manzt/napari-lazy-openslide
1 merged
Reviewed 5 pull requests in 3 repositories
hms-dbmi/viv 3 pull requests
manzt/lzw-tiff-decoder 1 pull request
gzuidhof/zarr.js 1 pull request

Created an issue in hms-dbmi/vizarr that received 3 comments

[feature] Reuse zarr metadata from one image for others in plate

Motivation: Currently we initialize each ZarrArray in a plate layout independently. This means that we make row x col requests for .zarray metadata p…

3 comments
Opened 4 other issues in 3 repositories
Started 1 discussion in 1 repository
14 contributions in private repositories Feb 1 – Feb 25

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