This is a beta version of Plum (see: https://doi.org/10.1007/s13253-018-0328-7).
- this version is the beta version of Plum, for the official R version see rplum.Plum is a R-package, with dependencies on Python 2.7, which uses a Bayesian approach to construct age-depth models for 210Pb data. At the moment Plum only works in Unix base OS (Linux-Mac) it depends on rPython package which is only available in these systems.
rplum has being accepted into CRAN (the R reposatories). For downloading this version use
install.packages('rplum')
library(rplum)
Plum()
In order to install plum the following have to be install in your system,
- R (>=3.0)
- rPython (R package)
- Python 2.7
- numpy (python package)
- scipy (python package)
- matplotlib (python package)
In the case of Mac OS, we recommend the installation of Anaconda (https://www.anaconda.com/download/). This will install python 2.7 and the necessary packages.
For linux,
Arch
pacman -S python2 python2-numpy python2-scipy python2-matplotlib
Fedora
yum install python python-numpy python-scipy python-matplotlib
Ubuntu
apt install python python-numpy python-scipy python-matplotli
To install rPython use install.packages("rPython", configure.vars= "RPYTHON_PYTHON_VERSION=2") this will let R know to use python 2.7.
library(devtools)
install_github("maquinolopez/Plum")
For questions contact me at: maquinolopez01@qub.ac.uk