MinHash alignment process (MHAP pronounced MAP): locality sensitive hashing to detect overlaps and utilities. This is the development branch, please use the latest tagged.
git clone https://github.com/marbl/MHAP.git cd MHAP mvn install
Maven executables vary by system, it could also be maven/mvn/mv32, depending on your installation. For a quick user-quide, run:
cd target java -jar mhap-2.1.3.jar
For the full documentation information please see http://mhap.readthedocs.io/en/latest/
- Berlin K, Koren S, Chin CS, Drake PJ, Landolin JM, Phillippy AM Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing. Nature Biotechnology. (2015).
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.