@marbl

MarBL

Maryland Bioinformatics Labs

  • A single molecule sequence assembler for genomes large and small.

    C++ 234 72 Updated Aug 13, 2018
  • MetaCompass: Reference-guided Assembly of Metagenomes

    Python 8 2 Artistic-2.0 Updated Aug 13, 2018
  • Web visualization tool for (meta)genome assembly graphs

    Python 3 2 Updated Aug 11, 2018
  • Fast genome and metagenome distance estimation using MinHash

    C++ 164 44 Updated Jul 30, 2018
  • A genomic k-mer counter (and sequence utility) with nice features.

    C 8 2 Updated Jul 19, 2018
  • Regression test cases and results for Canu.

    Ruby Updated May 29, 2018
  • Interactively explore metagenomes and more from a web browser.

    JavaScript 144 48 Updated Apr 3, 2018
  • A fast approximate aligner for long DNA sequences

    C++ 60 3 Updated Apr 3, 2018
  • MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities

    Java 64 7 Apache-2.0 Updated Mar 12, 2018
  • C++ 5 1 Updated Jan 14, 2018
  • MetaCarvel: A scaffolder for metagenomes

    C++ 2 7 Updated Dec 11, 2017
  • A metagenomic and isolate assembly and analysis pipeline built with AMOS

    Roff 84 36 Updated Nov 20, 2017
  • A pipeline for detecting mis-assemblies in metagenomic assemblies.

    TeX 10 1 MIT Updated Nov 3, 2017
  • MUMmer3

    C++ 2 2 Updated Aug 14, 2017
  • Python Updated Mar 4, 2017
  • C++ 7 Updated Oct 3, 2016
  • Seminar announcements

    Updated Oct 23, 2015
  • C++ 21 8 Updated Apr 16, 2015
  • 35 5 Updated Apr 16, 2015