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A single molecule sequence assembler for genomes large and small.
MetaCompass: Reference-guided Assembly of Metagenomes
Web visualization tool for (meta)genome assembly graphs
Fast genome and metagenome distance estimation using MinHash
A genomic k-mer counter (and sequence utility) with nice features.
Regression test cases and results for Canu.
Interactively explore metagenomes and more from a web browser.
A fast approximate aligner for long DNA sequences
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
MetaCarvel: A scaffolder for metagenomes
A metagenomic and isolate assembly and analysis pipeline built with AMOS
A pipeline for detecting mis-assemblies in metagenomic assemblies.