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FASTQ file filtering #1

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treangen opened this issue Sep 2, 2011 · 1 comment
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FASTQ file filtering #1

treangen opened this issue Sep 2, 2011 · 1 comment
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treangen commented Sep 2, 2011

Mated FASTQ reads in non-interleaved format MUST be aligned or all reads could potentially be discarded. Need to index read ids and check the pairs to see if they are in the file but slightly out of order. If so, should fix order. If can't be found, discard the read or place in unpaired/unmated/frag file.
@ghost ghost assigned treangen Sep 2, 2011
@hollybik hollybik mentioned this issue Mar 13, 2012
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@treangen treangen mentioned this issue Apr 12, 2012
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This issue has been fixed, closed.

@skoren skoren mentioned this issue May 6, 2013
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@cresnik cresnik mentioned this issue Jul 29, 2014
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@treangen treangen mentioned this issue Aug 6, 2014
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@sejmodha sejmodha mentioned this issue Oct 15, 2014
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@duanjunhyq duanjunhyq mentioned this issue Apr 21, 2016
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@chen496 chen496 mentioned this issue Apr 1, 2017
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