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use_cases.rst typos fixed
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sonegop committed Sep 18, 2018
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Expand Up @@ -140,11 +140,12 @@ Now the Platform is available and can be used to import the experiment retrieved
- Experiments > Parse Experiment EGEOD-58806 > Experiment Files > Platform and now click over A-GEOD-14649 in the Reporer Platform field and selected the previously imported GPL14649.

In order to parse the nimblegen .pair files:

- In Experiment files Section > File Assignment > Filter .pair and select all files
- click the 'Use assignment script to assign files to experiment entities' icon on the bottom-right and the Assign files and scripts to experiment structure dialog will pop-up:
- Script > `match_sample_name.py` > Only selected files
- Sample > Script: > `pair_sample.py`, Execution order: 2
- > Run assignment script
- Script: `match_sample_name.py` > Only selected files
- Sample: Script: > `pair_sample.py`, Execution order: 2
- Run assignment script


Use Case - Multiplatform Experiment
Expand Down Expand Up @@ -225,7 +226,7 @@ Use Case - Import experiment from local file

In order to import an experiment which is not available from public repositories the user needs to provide:

- a yaml file containing the descritption of the experiment to be imported;
- a yaml file containing the description of the experiment to be imported (see this example).
- a data matrix with the first row containing the sample names, the first columns containing the gene_ids and the rest of the columns containing raw gene expression values one for each sample.


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