Pipeline for the analysis of Lichen microbiomes
- Identify commensal bacteria associated with Lichen thalli
- Get richness and diversity measures of Lichen genera
- Compare lichen microbiomes and identify core OTUs
This repository contains the following directories:
Alpha-diversity. Rarefaction, diversity indices, abundance plots and diversity cladograms
Beta-diversity. Includes differentially analysis for microbiomes comparison
Core-microbiome. Includes prevalence of OTUs and core taxa
The Microbiomes of Seven Lichen Genera Reveal Host Specificity, a Reduced Core Community and Potential as Source of Antimicrobials. Front. Microbiol., 2020. https://doi.org/10.3389/fmicb.2020.00398