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mariogrs · May 13, 2018 · 4772a27 · 4772a27
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Showing 3 changed files with 50 additions and 2 deletions.
diff --git a/README.txt b/README.txt
@@ -21,7 +21,7 @@ Sultan Hassan
 = Description =
 
 This program generates a simulation of the cosmological 21cm signal during the epoch of reionization.
-To run just do: "./simfast21.x base_dir" where "base_dir" is the base directory where you want your simulation to reside (note that the files can be quite big). This base directory must contain the parameters file simfast21.ini (see the copy that comes with the distribution for further details on how to use this file).
+To run just do: "./simfast21 base_dir" where "base_dir" is the base directory where you want your simulation to reside (note that the files can be quite big). This base directory must contain the parameters file simfast21.ini (see the copy that comes with the distribution for further details on how to use this file).
 The program will create the following directory structure:
 base_dir/density     	    - contains the matter density (delta) box for z=0 and nonlinear boxes for all redshifts
         /Velocity    	    - Velocity at z=0

diff --git a/simfast21 b/simfast21
@@ -0,0 +1,48 @@
+#!/bin/sh
+
+echo
+echo SimFast21
+echo Generating the simulation in directory: $1
+echo
+
+DIR="${0%/*}"
+
+echo ------------------------------------------ Density Field ------------------------------------------
+${DIR}/get_densityfield.x $1
+echo
+echo ------------------------------------------ Halos ------------------------------------------
+${DIR}/get_halos.x $1 
+echo
+echo ------------------------------------------ velocity field ------------------------------------------
+${DIR}/get_velocityfield.x $1
+echo
+echo ------------------------------------------ Nonlinear density field ------------------------------------------
+${DIR}/get_nldensity.x $1  
+echo
+echo ------------------------------------------ Adjusted halo box ------------------------------------------
+${DIR}/adjust_halos.x $1 
+echo
+echo ------------------------------------------ SFRD box if needed ------------------------------------------
+${DIR}/get_SFR.x $1 
+echo
+echo ------------------------------------------ Ionization fraction ------------------------------------------
+${DIR}/get_HIIbubbles.x $1
+echo
+echo ------------------------------------------ Epsilon over n ------------------------------------------
+${DIR}/epsilonXon.x $1      
+echo
+echo ------------------------------------------ IGM xe ------------------------------------------
+${DIR}/integratexe.x $1
+echo
+echo ------------------------------------------ Xrays Temperature ------------------------------------------ 
+${DIR}/integrateTempX.x $1  
+echo
+echo ------------------------------------------ xalpha ------------------------------------------
+${DIR}/xalpha.x $1
+echo
+echo ------------------------------------------ xc ------------------------------------------
+${DIR}/xc.x $1
+echo
+echo ------------------------------------------ 21cm brightness temperature ------------------------------------------
+${DIR}/t21.x $1
+echo
diff --git a/simfast21.ini b/simfast21.ini
@@ -77,7 +77,7 @@ bubble_Nbins = 50
 ### Lya + xrays ###
 #Compute Lya alpha coupling and gas temperature fluctations
 #this should be set to T for accurate brightness temperature maps
-#Set it to F only for redshifts lower than 9 or for comparision reasons at 
+#Set it to F only for redshifts lower than 9 or for comparison reasons at 
 #higher redshifts  
 use_Lya_xrays = F
 # If use_Lya_xrays = T, SFR will be calculated down to the redshift specified here. Below that, the code just assumes T_S >> T_CMB