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@markmikkelsen markmikkelsen released this 22 Oct 22:43
· 146 commits to main since this release
v3.3.0
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Learn about vigilant mode.

New features

  • Added functionality to read NIfTI-MRS files (Clarke et al., MRM, 2022) (NIfTIMRSRead.m); includes additional new function GannetMask_NIfTI.m for voxel co-registration
  • Added support for Utah Siemens MEGA-PRESS sequence (DICOM files)
  • Added support for CMRR PRESS data (DICOM files)
  • Added support for Siemens XA30 sequence as provided by JHU
  • Changed README to README.md, which now includes badges

Major changes

  • Coil combination of GE, NIfTI-MRS, and Siemens TWIX files is now performed using generalized least squares (An et al., JMRI, 2013); this approach has been shown to result in optimal SNR and reduce spectral artifacts
  • The Gannet logo has been reverted to the original image of a gannet

Minor changes

  • Added functionality for GE data in AlignSubSpectra_PreAlignRef.m
  • An error is presented if not enough inputs are given for any of the Gannet modules
  • CoRegStandAlone outputs can be hidden if MRS_struct.p.hide is set to 1 in CoRegStandAlone.m (default is 0)
  • If the user has no internet connection, VersionCheck.m and UpdateGannet.m will not run
  • Updated dicm2nii to latest version (version 2022.09.15)
  • Updated mapVBVD functions to latest version (https://github.com/pehses/mapVBVD)
  • Turned off warnings of iteration limits in SpectralRegistrationHERMES.m and GannetFit.m
  • Many cosmetic changes in the code

Bug fixes

  • Fixed bug in error reporting in GannetFit.m
  • CoRegStandAlone routines now parse version numbers from the main modules properly
  • Variable filesExist in GannetSegment.m may not populate; it is now pre-initialized as a precaution
  • Bug fix in GannetMask_SiemensRDA.m
  • Bug fixes for reading DICOM files
Assets 2