Frontiers in Microbiology publication: Candidatus Amarolinea and Candidatus Microthrix Are Mainly Responsible for Filamentous Bulking in Municipal Danish Wastewater Treatment Plants
This repository contains R code and metadata that allows to reproduce analysis and figures presented in the above publication. otutable and tax files are available upon request.
Filaments_DK_Frontiers.Rmd file contains R code neccessary to reproduce Figures 1-5 and 7-10, as well as S1-2. Filaments_DK_Frontiers_PLS.Rmd contains R code neccessary to reproduce PLS model and Figure 6. metadata.xlsx - main metadata file metadata_Aalborg W.xlsx - metadata for the analysis of detailed Aalborg W time-series