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  • Broad Institute
  • Cambridge, MA; Rehovot, Israel
  • X @matanhofree

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  1. crc-immune-hubs crc-immune-hubs Public

    Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

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  2. lungTumorEvolution lungTumorEvolution Public

    Algorithms and code developed as part of the study described in Marjanovic et al.

    Jupyter Notebook 9 1

  3. scde scde Public

    Forked from hms-dbmi/scde

    R package for analyzing single-cell RNA-seq data

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  4. bcbio-nextgen bcbio-nextgen Public

    Forked from bcbio/bcbio-nextgen

    Best-practice pipelines for fully automated high throughput sequencing analysis

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  5. salmon salmon Public

    Forked from COMBINE-lab/salmon

    Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

    C++

  6. SeqLib SeqLib Public

    Forked from walaj/SeqLib

    C++ htslib/bwa-mem/fermi interface for interrogating sequence data

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