Nearest neighbour based phasing algorithm
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.gitignore
LICENSE
README
c_viterbi2.pyx
pace.py
pace_io.py
pace_manual.tex
phasing.py
preclustering.py
recombination.py
setup.py
testdata.gt.txt
viterbi_2d_helpers.py

README

Quickstart: 

1. Install >python setup.py install
2. Test    >python pace.py -m testdata.gt.txt -r 0.15 -o testout -p
3. Help    >python pace.py -h

Requirements:

PACE requires Python version 2.6 or 2.7. In addition it requires the packages
numpy, scipy and cython. We reccomend obtaining these through the Enthought
Python Distribution (EPD) which is freely available for academic use from 
http://www.enthought.com/.
 
Manual: 

>pdflatex pace_manual.tex  
>pdflatex pace_manual.tex

(run twice) for full details of options.