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An open source and cross platform application to fix, and find problems in protein FASTA sequence files.

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maxhebditch/tidyfasta-gui

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Tidy FASTA GUI

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An open source and cross platform application to fix, and find problems in protein FASTA sequence files.

Reformat whitespace

Non-canonical AA

Features

tidyFASTA is a cross platform application (Windows, Mac OS X, Linux) and is available free of charge and without registration.

Problems and fixes

Problem Fix (Strict mode)
Sequence without ID ID name added
Multiline sequence One line per sequence
ID without sequence Sequence ignored (Exception raised)
Non canonical AA Sequence ignored (Exception raised)
Lowercase AA Converts to uppercase AA
Excessive Whitespace Removes excessive whitespace

Installation

  1. Install java (if required)
    • If Java is not already installed on your computer (version 11 or greater), it is available here for all major operating systems.
  2. Download the jar file from the release tab.
  3. Run the tidyFASTA-gui file by opening the file, or from the command line.

Security

tidyFASTA is open source and all processing is run entirely on your local machine.

Alternatives

tidyFASTA is also available as a python package.

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An open source and cross platform application to fix, and find problems in protein FASTA sequence files.

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