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README.rst

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+===========================================================
+MPI-IE Snakemake workflows : snakePipes
+===========================================================
+
+.. image:: https://readthedocs.org/projects/snakepipes/badge/?version=latest
+:target: http://snakepipes.readthedocs.io/en/latest/?badge=latest
+:alt: Documentation Status
+
+snakePipes are our in-house, flexible and powerful workflows built using `snakemake <snakemake.readthedocs.io>`__ that simplify the analysis of NGS data.
+
+Workflows
+----------
+
+- DNA-mapping
+- ChIP-seq (normal and allele-specific)
+- RNA-seq (normal and allele-specific)
+- scRNA-seq
+- ATAC-seq
+
+Installation
+-------------
+
+Currently the workflows don't require installation of the scripts. Simply clone this github repository
+and modify the configuration files with your own paths.
+
+Documentation
+--------------
+
+For documentation on setup and usage, please visit our `read the docs page <snakepipes.readthedocs.io/en/latest/>`__.