This repository contains the code used to create the data browser available through the web at: http://parnell-lab.med.unc.edu/Embryo-Transcriptomics/. The browser was written in R Shiny and can be run locally in RStudio with this command:
shiny::runApp('.')
In addition to shiny, this application requires the tidyverse, here, ggplot2, reactable, dqshiny and shinylogs packages. The dqshiny package is only available through github: https://github.com/daqana/dqshiny.
If you use the code or data associated with this repository, please cite:
Boshen et al. Transcriptomic analyses of two closely related substrains of gastrulation-stage mouse embryos with differential susceptibility to prenatal alcohol exposure, Dis Model Mech 2021; dmm.049012. doi: https://doi.org/10.1242/dmm.049012