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Hi Matt,
I have made following modifications to support Python3. Please take note that they are not gonna work on Python2. To support both of them, personally, I have no idea either to have only one set of code with "if-else" all over the place or making extra effort supporting two set of code.
I have converted console unit testing into IPython notebook. Following is the URL to view it on browser.
http://nbviewer.ipython.org/urls/raw.githubusercontent.com/ekaakurniawan/PubChemPy/master/PubChemPy.ipynb?create=1
Regards,
Eka A. Kurniawan