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missing setuptools dependency in v0.7.2 #207

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merged 5 commits into from
Feb 16, 2023
Merged

missing setuptools dependency in v0.7.2 #207

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4de0b61
Add setuptools dependency to fix #206
mdshw5 Feb 16, 2023
5b137fb
Add test case for cli script version string
mdshw5 Feb 16, 2023
ceeed4b
Test pyfaidx module version
mdshw5 Feb 16, 2023
b79d5f4
Update test_feature_indexing.py
mdshw5 Feb 16, 2023
5a74e14
Remove version test for cli script
mdshw5 Feb 16, 2023
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3 changes: 2 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,8 @@ classifiers = [
"Topic :: Scientific/Engineering :: Bio-Informatics"
]
dependencies = [
"six"
"six",
"setuptools"
]
dynamic = ["version"]

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6 changes: 5 additions & 1 deletion tests/test_feature_indexing.py
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Expand Up @@ -24,6 +24,10 @@ def remove_index():
os.remove('data/genes.fasta.fai')
except EnvironmentError:
pass # some tests may delete this file

def test_version_issue_206():
import pyfaidx
assert isinstance(pyfaidx.__version__, str)

def test_build(remove_index):
expect_index = ("gi|563317589|dbj|AB821309.1| 3510 114 70 71\n"
Expand Down Expand Up @@ -349,4 +353,4 @@ def test_issue_144_no_defline(remove_index):
with pytest.raises(FastaIndexingError):
faidx = Faidx(fasta_path)
finally:
shutil.rmtree(tmp_dir)
shutil.rmtree(tmp_dir)