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Upgrading the way we deal with single-copy gene collections #401

Merged
merged 26 commits into from Sep 17, 2016
Merged

Upgrading the way we deal with single-copy gene collections #401

merged 26 commits into from Sep 17, 2016

Commits on Aug 31, 2016

  1. remove two bacterial SCG collections

    @meren
    meren committed Aug 31, 2016
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  2. An archaeal SCG collection by Rinke et al. 

    Special thanks for preparing this go to Mike Lee.
    @meren
    meren committed Aug 31, 2016
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  3. The kind of single-copy gene collection 

    This new addition to the kind.txt will make it easier to recognize
different classes of single-copy core genes.
    @meren
    meren committed Aug 31, 2016
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  4. cosmetique

    @meren
    meren committed Aug 31, 2016
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  5. mention domains in the info line.

    @meren
    meren committed Aug 31, 2016
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  6. return domain information if it exists

    @meren
    meren committed Aug 31, 2016
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  7. a new column for the hmm hits infor table

    @meren
    meren committed Aug 31, 2016
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  8. adding domain info to the database

    @meren
    meren committed Aug 31, 2016
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  9. upgrade contigs db from v6 to v7

    @meren
    meren committed Aug 31, 2016
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  10. prettier

    @meren
    meren committed Aug 31, 2016
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  11. domain info is in the class

    @meren
    meren committed Aug 31, 2016
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Commits on Sep 8, 2016

  1. fixy

    @meren
    meren committed Sep 8, 2016
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  2. a function to get best matching domain for a bin

    @meren
    meren committed Sep 8, 2016
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  3. renaming capacity with domains

    @meren
    meren committed Sep 8, 2016
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  4. typo

    @meren
    meren committed Sep 8, 2016
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Commits on Sep 9, 2016

  1. fixy

    @meren
    meren committed Sep 9, 2016
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Commits on Sep 16, 2016

  1. more structure

    @meren
    meren committed Sep 16, 2016
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  2. working with the new domain-based design

    @meren
    meren committed Sep 16, 2016
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  3. anvi-rename-bin is compatible w/ the new design

    @meren
    meren committed Sep 16, 2016
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  4. CPR predictor is on board

    @meren
    meren committed Sep 16, 2016
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  5. summary fixy. welcome, domains.

    @meren
    meren committed Sep 16, 2016
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  6. collection mode fixy

    @meren
    meren committed Sep 16, 2016
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Commits on Sep 17, 2016

  1. up with scg domains

    @meren
    meren committed Sep 17, 2016
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  2. change the bottle callback for completion

    @meren
    meren committed Sep 17, 2016
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  3. year old bug is fixed

    @meren
    meren committed Sep 17, 2016
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  4. now only domain specific predictors are shown

    @meren
    meren committed Sep 17, 2016
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