build with external mfem still broken #210

bclyons12 · 2024-02-16T00:33:08Z

I saw that #208 got merged into master, but I am still unable to build PyMFEM against my own parallel MFEM installation. I am using

python3 setup.py install --mfem-source=/Users/lyons/src/mfem_pymfem --mfem-prefix=/Users/lyons/src/mfem_pymfem/petsc_real-mac/ --with-parallel --skip-ext --metis-prefix=/Users/lyons/src/petsc/real-mac --hypre-prefix=/usr/local/Cellar/hypre/2.30.0

It gets stuck with ModuleNotFoundError: No module named 'distutils'.
Full installation output attached

It appears that python can't find distutils inside of mfem/_ser. I attempted to import setuptools._distutils.__init__ from a fresh python session inside that folder and I get

>>> import setuptools._distutils.__init__
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/__init__.py", line 13, in <module>
    from . import version as _version_module
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/version.py", line 1, in <module>
    from ._importlib import metadata
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/_importlib.py", line 45, in <module>
    import importlib.metadata as metadata  # noqa: F401
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/importlib/metadata/__init__.py", line 19, in <module>
    from . import _adapters, _meta
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/importlib/metadata/_adapters.py", line 5, in <module>
    import email.message
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/email/message.py", line 15, in <module>
    from email import utils
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/email/utils.py", line 29, in <module>
    import socket
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/socket.py", line 551, in <module>
    import array
  File "/Users/lyons/src/PyMFEM/mfem/_ser/array.py", line 12, in <module>
    import _array
ModuleNotFoundError: No module named '_array'

There is a mfem/_ser/__pycache__/array.cpython-312.pyc, so perhaps that cache is interfering with something?

This looks similar to #187 and #114. Possibly related to #188 and/or #205.

Environment info

macOS Ventura 13.6.4
Latest master of PyMFEM (c318aa6)
MFEM at commit mfem/mfem@4a45c70, consistent with the notes on PyMFEM v4.6.1
SWIG is v4.2.0 installed via Homebrew
setuptools is v69.0.3, installed via conda.

The text was updated successfully, but these errors were encountered:

bclyons12 · 2024-02-16T20:58:37Z

The same error occurs without a custom MFEM installation:

python setup.py install --with-parallel --MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc --MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx --mfem-branch=master

sshiraiwa · 2024-02-17T14:26:26Z

Thank you for heads-up. 3.12 removed distutiles. We needs to look into it, meantime can you use 3.11 or earlier?

bclyons12 · 2024-03-21T15:23:05Z

@sshiraiwa I downgraded to python 3.11.8 and I still have installation issues. Here's my environment and the error I get:

Environment info

macOS Ventura 13.6.5
Latest master of PyMFEM (c318aa6)
SWIG is v4.2.1 installed via Homebrew
setuptools is v69.2.0, installed via conda.

calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_base.i
multiprocessing.pool.RemoteTraceback: 
"""
Traceback (most recent call last):
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 125, in worker
    result = (True, func(*args, **kwds))
                    ^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
    return list(map(*args))
           ^^^^^^^^^^^^^^^^
  File "/Users/lyons/src/PyMFEM/setup.py", line 330, in make_call
    raise subprocess.CalledProcessError(p.returncode,
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/Users/lyons/src/PyMFEM/setup.py", line 1924, in <module>
    main()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1920, in main
    run_setup()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1908, in run_setup
    setup(
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/__init__.py", line 104, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1705, in run
    _install.run(self)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/command/install.py", line 85, in run
    orig.install.run(self)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/install.py", line 697, in run
    self.run_command('build')
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
    self.distribution.run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
    self.run_command(cmd_name)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
    self.distribution.run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1760, in run
    generate_wrapper()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1094, in generate_wrapper
    mp_pool.map(make_call, commands)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 367, in map
    return self._map_async(func, iterable, mapstar, chunksize).get()
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 774, in get
    raise self._value
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.

I also still have the same distutils error inside the mfem/_ser folder:

Lyons% python
Python 3.11.8 | packaged by conda-forge | (main, Feb 16 2024, 20:51:20) [Clang 16.0.6 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import setuptools._distutils.__init__
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/__init__.py", line 14, in <module>
    from . import version as _version_module
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/version.py", line 1, in <module>
    from ._importlib import metadata
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_importlib.py", line 45, in <module>
    import importlib.metadata as metadata  # noqa: F401
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/importlib/metadata/__init__.py", line 17, in <module>
    from . import _adapters, _meta
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/importlib/metadata/_adapters.py", line 3, in <module>
    import email.message
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/email/message.py", line 15, in <module>
    from email import utils
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/email/utils.py", line 29, in <module>
    import socket
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/socket.py", line 550, in <module>
    import array
  File "/Users/lyons/src/PyMFEM/mfem/_ser/array.py", line 12, in <module>
    import _array
ModuleNotFoundError: No module named '_array'

Full installation output

``` Lyons% python setup.py install --with-parallel --MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc --MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx --mfem-branch=master running install /Users/lyons/src/PyMFEM/setup.py:1597: SetuptoolsDeprecationWarning: setup.py install is deprecated. !!

    ********************************************************************************
    Please avoid running ``setup.py`` directly.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
    ********************************************************************************

!!
_install.initialize_options(self)
ext_prefix
running external_install_prefix with the following parameters
sys.argv : ['setup.py', 'install', '--with-parallel', '--MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc', '--MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx', '--mfem-branch=master']
sys.prefix : /usr/local/Caskroom/mambaforge/base
usersite : /Users/lyons/.local/lib/python3.11/site-packages
prefix : /usr/local/Caskroom/mambaforge/base
----configuration----
prefix /usr/local/Caskroom/mambaforge/base
when needed, the dependency (mfem/hypre/metis) will be installed under /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external
build mfem : Yes
build metis : Yes
build hypre : Yes
build libceed : No
build gslib : No
call SWIG wrapper generator: Yes
build serial wrapper: Yes
build parallel wrapper : Yes
hypre prefix /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external
metis prefix /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external
c compiler : cc
c++ compiler : c++
mpi-c compiler : /usr/local/Cellar/open-mpi/5.0.2/bin/mpicc
mpi-c++ compiler : /usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx
verbose : No
SWIG : /usr/local/bin/swig

running build
running build_py
Downloading : https://github.com/mfem/tpls/raw/gh-pages/metis-5.1.0.tar.gz
calling ... make config shared=1 prefix=/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external cc=cc
calling ... make -j 7
/usr/local/Cellar/cmake/3.28.3/bin/cmake -S/Users/lyons/src/PyMFEM/external/metis -B/Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_progress_start /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/CMakeFiles /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64//CMakeFiles/progress.marks
/Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all
/Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/libmetis /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis/CMakeFiles/metis.dir/DependInfo.cmake "--color="
/Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build
[ 2%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/csr.c.o
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/blas.c.o -MF CMakeFiles/metis.dir//GKlib/blas.c.o.d -o CMakeFiles/metis.dir//GKlib/blas.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/blas.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/getopt.c.o -MF CMakeFiles/metis.dir//GKlib/getopt.c.o.d -o CMakeFiles/metis.dir//GKlib/getopt.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/getopt.c
[ 12%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/graph.c.o
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/htable.c.o -MF CMakeFiles/metis.dir//GKlib/htable.c.o.d -o CMakeFiles/metis.dir//GKlib/htable.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/htable.c
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/graph.c.o -MF CMakeFiles/metis.dir//GKlib/graph.c.o.d -o CMakeFiles/metis.dir//GKlib/graph.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/graph.c
[ 13%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/io.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/io.c.o -MF CMakeFiles/metis.dir//GKlib/io.c.o.d -o CMakeFiles/metis.dir//GKlib/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/io.c
[ 14%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/itemsets.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/itemsets.c.o -MF CMakeFiles/metis.dir//GKlib/itemsets.c.o.d -o CMakeFiles/metis.dir//GKlib/itemsets.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/itemsets.c
[ 15%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/mcore.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/mcore.c.o -MF CMakeFiles/metis.dir//GKlib/mcore.c.o.d -o CMakeFiles/metis.dir//GKlib/mcore.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/mcore.c
[ 17%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/memory.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/memory.c.o -MF CMakeFiles/metis.dir//GKlib/memory.c.o.d -o CMakeFiles/metis.dir//GKlib/memory.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/memory.c
[ 18%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/omp.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/omp.c.o -MF CMakeFiles/metis.dir//GKlib/omp.c.o.d -o CMakeFiles/metis.dir//GKlib/omp.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/omp.c
[ 19%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/pdb.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/pdb.c.o -MF CMakeFiles/metis.dir//GKlib/pdb.c.o.d -o CMakeFiles/metis.dir//GKlib/pdb.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c
[ 20%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/pqueue.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/pqueue.c.o -MF CMakeFiles/metis.dir//GKlib/pqueue.c.o.d -o CMakeFiles/metis.dir//GKlib/pqueue.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/pqueue.c
[ 21%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/random.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/random.c.o -MF CMakeFiles/metis.dir//GKlib/random.c.o.d -o CMakeFiles/metis.dir//GKlib/random.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/random.c
[ 22%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/rw.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/rw.c.o -MF CMakeFiles/metis.dir//GKlib/rw.c.o.d -o CMakeFiles/metis.dir//GKlib/rw.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/rw.c
/Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c:168:4: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 6, but the corresponding specifier may require size 7 [-Wfortify-source]
linetype,&aserial,aname,&altLoc,rname,&chainid,&rserial,&icode,&x,&y,&z,&opcy,&tmpt,&element);
^
/Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c:229:4: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 6, but the corresponding specifier may require size 7 [-Wfortify-source]
linetype,&aserial,aname,&altLoc,rname,&chainid,&rserial,&icode,&x,&y,&z,&opcy,&tmpt,&element);
^
[ 23%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/seq.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/seq.c.o -MF CMakeFiles/metis.dir//GKlib/seq.c.o.d -o CMakeFiles/metis.dir//GKlib/seq.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/seq.c
2 warnings generated.
[ 25%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/sort.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/sort.c.o -MF CMakeFiles/metis.dir//GKlib/sort.c.o.d -o CMakeFiles/metis.dir//GKlib/sort.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/sort.c
[ 26%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/string.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/string.c.o -MF CMakeFiles/metis.dir//GKlib/string.c.o.d -o CMakeFiles/metis.dir//GKlib/string.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/string.c
[ 27%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/timers.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/timers.c.o -MF CMakeFiles/metis.dir//GKlib/timers.c.o.d -o CMakeFiles/metis.dir//GKlib/timers.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/timers.c
[ 28%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/tokenizer.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/tokenizer.c.o -MF CMakeFiles/metis.dir//GKlib/tokenizer.c.o.d -o CMakeFiles/metis.dir//GKlib/tokenizer.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/tokenizer.c
[ 29%] Building C object libmetis/CMakeFiles/metis.dir//GKlib/util.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir//GKlib/util.c.o -MF CMakeFiles/metis.dir//GKlib/util.c.o.d -o CMakeFiles/metis.dir//GKlib/util.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/util.c
[ 30%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/auxapi.c.o -MF CMakeFiles/metis.dir/auxapi.c.o.d -o CMakeFiles/metis.dir/auxapi.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/auxapi.c
[ 31%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/balance.c.o -MF CMakeFiles/metis.dir/balance.c.o.d -o CMakeFiles/metis.dir/balance.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c
[ 34%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o
[ 34%] Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/checkgraph.c.o -MF CMakeFiles/metis.dir/checkgraph.c.o.d -o CMakeFiles/metis.dir/checkgraph.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/checkgraph.c
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/bucketsort.c.o -MF CMakeFiles/metis.dir/bucketsort.c.o.d -o CMakeFiles/metis.dir/bucketsort.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/bucketsort.c
/Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c:23:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
if (iabs(ntpwgts[0]graph->tvwgt[0]-graph->pwgts[0]) < 3graph->tvwgt[0]/graph->nvtxs)
^
/Users/lyons/src/PyMFEM/external/metis/include/metis.h:98:25: note: expanded from macro 'iabs'
#define iabs abs
^
/Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c:23:9: note: use function 'fabsf' instead
if (iabs(ntpwgts[0]graph->tvwgt[0]-graph->pwgts[0]) < 3graph->tvwgt[0]/graph->nvtxs)
^~~~
fabsf
/Users/lyons/src/PyMFEM/external/metis/include/metis.h:98:25: note: expanded from macro 'iabs'
#define iabs abs
^
[ 35%] Building C object libmetis/CMakeFiles/metis.dir/coarsen.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/coarsen.c.o -MF CMakeFiles/metis.dir/coarsen.c.o.d -o CMakeFiles/metis.dir/coarsen.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/coarsen.c
[ 36%] Building C object libmetis/CMakeFiles/metis.dir/compress.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/compress.c.o -MF CMakeFiles/metis.dir/compress.c.o.d -o CMakeFiles/metis.dir/compress.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/compress.c
[ 37%] Building C object libmetis/CMakeFiles/metis.dir/contig.c.o
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/contig.c.o -MF CMakeFiles/metis.dir/contig.c.o.d -o CMakeFiles/metis.dir/contig.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/contig.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/timing.c.o -MF CMakeFiles/metis.dir/timing.c.o.d -o CMakeFiles/metis.dir/timing.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/timing.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/util.c.o -MF CMakeFiles/metis.dir/util.c.o.d -o CMakeFiles/metis.dir/util.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/util.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/wspace.c.o -MF CMakeFiles/metis.dir/wspace.c.o.d -o CMakeFiles/metis.dir/wspace.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/wspace.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1
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[ 70%] Built target metis
/Library/Developer/CommandLineTools/usr/bin/make -f programs/CMakeFiles/gpmetis.dir/build.make programs/CMakeFiles/gpmetis.dir/depend
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/gpmetis.dir/DependInfo.cmake "--color="
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/ndmetis.dir/DependInfo.cmake "--color="
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/mpmetis.dir/DependInfo.cmake "--color="
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/m2gmetis.dir/DependInfo.cmake "--color="
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/graphchk.dir/DependInfo.cmake "--color="
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs/CMakeFiles/cmpfillin.dir/DependInfo.cmake "--color="
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[ 73%] Building C object programs/CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o -MF CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o.d -o CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmdline_ndmetis.c
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/m2gmetis.dir/m2gmetis.c.o -MF CMakeFiles/m2gmetis.dir/m2gmetis.c.o.d -o CMakeFiles/m2gmetis.dir/m2gmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/m2gmetis.c
cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/ndmetis.dir/ndmetis.c.o -MF CMakeFiles/ndmetis.dir/ndmetis.c.o.d -o CMakeFiles/ndmetis.dir/ndmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/ndmetis.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/gpmetis.dir/gpmetis.c.o -MF CMakeFiles/gpmetis.dir/gpmetis.c.o.d -o CMakeFiles/gpmetis.dir/gpmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/gpmetis.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/graphchk.dir/graphchk.c.o -MF CMakeFiles/graphchk.dir/graphchk.c.o.d -o CMakeFiles/graphchk.dir/graphchk.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/graphchk.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/m2gmetis.dir/io.c.o -MF CMakeFiles/m2gmetis.dir/io.c.o.d -o CMakeFiles/m2gmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/cmpfillin.dir/smbfactor.c.o -MF CMakeFiles/cmpfillin.dir/smbfactor.c.o.d -o CMakeFiles/cmpfillin.dir/smbfactor.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/smbfactor.c
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cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO="" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/mpmetis.dir/io.c.o -MF CMakeFiles/mpmetis.dir/io.c.o.d -o CMakeFiles/mpmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c
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/usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_progress_start /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/CMakeFiles 0
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Downloading : https://github.com/hypre-space/hypre/archive/v2.28.0.tar.gz
working directory already exists!
calling ... cmake .. -DBUILD_SHARED_LIBS=1 -DHYPRE_INSTALL_PREFIX=/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external -DHYPRE_ENABLE_SHARED=1 -DCMAKE_C_FLAGS=-fPIC -DCMAKE_INSTALL_PREFIX=/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external -DCMAKE_INSTALL_NAME_DIR=/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/lib -DCMAKE_C_COMPILER=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc
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calling ... make install
copying mesh data for testing ../data /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser
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calling ... make install
copying mesh data for testing ../data /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/par
updating the list of existing headers
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem lininteg.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem bilininteg.i
calling ... /usr/local/Caskroom/mambaforge/base/bin/python generate_lininteg_ext.py
calling ... /usr/local/Caskroom/mambaforge/base/bin/python generate_bilininteg_ext.py
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_pos.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem vtk.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_h1.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem wedge.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem blockvector.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tmop_tools.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem socketstream.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem operators.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem error.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem complex_operator.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem intrules_cut.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_fixed_order.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem nonlinearform.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem vertex.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem doftrans.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem ode.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem point.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem io_stream.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem bilinearform.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_nd.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem coefficient.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem quadinterpolator_face.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem densemat.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem gridfunc.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem submesh.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem segment.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem mesh.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_l2.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem globals.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem datacollection.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem constraints.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem solvers.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem eltrans.i
Failed when calling command: /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem sparsesmoothers.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem linearform.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem blockmatrix.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem sparsemat.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem sets.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem sort_pairs.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tmop_amr.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem quadinterpolator.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem element.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem transfermap.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem hexahedron.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem multigrid.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_rt.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem qspace.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem staticcond.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tmop.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem matrix.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem estimators.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem sidredatacollection.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem istream_typemap.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem common_functions.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem stable3d.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem gslib.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem array.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_nurbs.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem handle.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem ncmesh.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem symmat.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_ser.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem complex_fem.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem vector.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem triangle.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem mesh_operators.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem mem_manager.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem geom.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem hybridization.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem blockoperator.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem std_vectors.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem cpointers.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tetrahedron.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem table.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem quadrilateral.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem ostream_typemap.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem hash.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_coll.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem transfer.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem nonlininteg.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fespace.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem qfunction.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fespacehierarchy.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem intrules.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem restriction.i
calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_base.i
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
^^^^^^^^^^^^^^^^
File "/Users/lyons/src/PyMFEM/setup.py", line 330, in make_call
raise subprocess.CalledProcessError(p.returncode,
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "/Users/lyons/src/PyMFEM/setup.py", line 1924, in
main()
File "/Users/lyons/src/PyMFEM/setup.py", line 1920, in main
run_setup()
File "/Users/lyons/src/PyMFEM/setup.py", line 1908, in run_setup
setup(
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/init.py", line 104, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/Users/lyons/src/PyMFEM/setup.py", line 1705, in run
_install.run(self)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/command/install.py", line 85, in run
orig.install.run(self)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/install.py", line 697, in run
self.run_command('build')
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
self.run_command(cmd_name)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/Users/lyons/src/PyMFEM/setup.py", line 1760, in run
generate_wrapper()
File "/Users/lyons/src/PyMFEM/setup.py", line 1094, in generate_wrapper
mp_pool.map(make_call, commands)
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 367, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 774, in get
raise self._value
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.

</details>

jandrej · 2024-03-21T16:29:44Z

I'm not very familiar with the python setup, but would proper cmake exports from mfem would alleviate such issues? Or is most of the linking/include setup for python required to be done manually?

sshiraiwa added build Python3.12 Issues relating to Python3.12 labels Feb 17, 2024

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build with external mfem still broken #210

build with external mfem still broken #210

bclyons12 commented Feb 16, 2024

bclyons12 commented Feb 16, 2024

sshiraiwa commented Feb 17, 2024

bclyons12 commented Mar 21, 2024

jandrej commented Mar 21, 2024

build with external mfem still broken #210

build with external mfem still broken #210

Comments

bclyons12 commented Feb 16, 2024

bclyons12 commented Feb 16, 2024

sshiraiwa commented Feb 17, 2024

bclyons12 commented Mar 21, 2024

jandrej commented Mar 21, 2024