Merge branch 'moa.0.10' of git@ssh.github.com:mfiers/Moa into moa.0.10

* 'moa.0.10' of git@ssh.github.com:mfiers/Moa: fixed newbler bug - removed -consed parameter [#13 state:resolved] updated the README file [#12 state:resolved]
mfiers · Apr 1, 2011 · d96e034 · d96e034
2 parents 426d801 + 57b913d
commit d96e034
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diff --git a/README b/README
@@ -1,6 +1,11 @@
-Moa - makefiles for bioinformatics.
+Moa - lightweight workflows in bioinformatics.
 
-For installation & operation please read the manual in
-./doc/manual.pdf or read it using your browser in ./doc/html/
+For installation & operation please read the manual:
+
+http://mfiers.github.com/Moa/
+
+or try:
+
+moa --help
 
 
diff --git a/template2/newbler.mk b/template2/newbler.mk
@@ -41,7 +41,7 @@ newbler: 454AllContigs.fna 454LargeContigs.all.png
 
 #454LargeContigs.all.png
 
-newbler_cl = runAssembly -ace -o . -consed \
+newbler_cl = runAssembly -ace -o . \
 		$(if $(newbler_mid_configuration),-mcf $(newbler_mid_configuration)) 	\
 		$(if $(newbler_min_identity), -mi $(newbler_min_identity)) 		\
 		$(if $(newbler_largecontig_cutoff), -l $(newbler_largecontig_cutoff)) 	\