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A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

broadinstitute.github.io/picard/
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A set of Java command line tools for maniuplating high-throughput sequencing data (HTS) data and formats.

Picard is implemented using the HTSJDK Java libraryHTSJDK, supporting acce accessing of common file formats, such as SAM and VCF, used for high-throughput sequencing data.

Please see the Picard Documentation for more information.

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A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

broadinstitute.github.io/picard/

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