relax pandas version for 3.9

micom-dev · Apr 15, 2024 · bd7c109 · bd7c109
1 parent 0a7cdbe
commit bd7c109
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/micom/viz/association.py b/micom/viz/association.py
@@ -104,7 +104,7 @@ def plot_association(
     fluxes = exchanges.pivot_table(
         index="sample_id", columns="metabolite", values="flux", fill_value=atol
     )
-    fluxes = fluxes.map(np.log)
+    fluxes = fluxes.applymap(np.log)
     meta = phenotype[fluxes.index]
     stds = fluxes.std(axis=1)
     bad = stds < atol