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365 Open 902 Closed
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Issues list

alternative to hard-coded ___indentation in environmental context value sets: is_a relations between permissible values
#2184 opened Sep 18, 2024 by turbomam
novaseq x updates
#2183 opened Sep 16, 2024 by aclum
add genomad file type enumerations
#2182 opened Sep 16, 2024 by aclum
berkeley-schema-fy24: make squeaky-clean all output begins with error message about missing file local/gold-study-ids.yaml backlog Issue not assigned to a sprint or not completed during a sprint. Needs to be reprioritized. bug Something isn't working cleanup unfinished wasn't completed during sprint, should be reprioritized and/or broken down to smaller issues X SMALL Less than 8 hours, less than 1 day
#2177 opened Sep 6, 2024 by eecavanna
@turbomam
1
Document process of merging nmdc-schema/main into berkeley-schema-fy24/main (in local slang: "backmerge") documentation Improvements or additions to documentation X SMALL Less than 8 hours, less than 1 day
#2170 opened Aug 23, 2024 by eecavanna
@turbomam
7
Add kegg module prefix
#2169 opened Aug 23, 2024 by aclum
Delete .swp file from repo or document rationale for including it cleanup X SMALL Less than 8 hours, less than 1 day
#2168 opened Aug 23, 2024 by eecavanna
2
env_package should have a range of an Enum
#2167 opened Aug 22, 2024 by sujaypatil96
4
Slot name on PersonValue class needs to made more granular
#2166 opened Aug 22, 2024 by sujaypatil96
Other updates to MagBin modeling
#2160 opened Aug 16, 2024 by aclum
3 tasks
Remove PeptideQuantification class, migrate information from PeptideQuantification best_protein slot to new slot on MetaproteomicsAnalysis class
#2157 opened Aug 13, 2024 by kheal
@kheal
Markdown docs contain broken links broken-link documentation Improvements or additions to documentation
#2156 opened Aug 10, 2024 by github-actions bot
add unique_keys to FunctionalAnnotationAggMember
#2155 opened Aug 8, 2024 by aclum
@kheal
2
berkeley breakdown AnalyteCategoryEnum into types allowable for NucleotideSequencing and MassSpectrometry
#2154 opened Aug 8, 2024 by aclum
Range for metabolite_identified slot should not be ChemicalEntity
#2153 opened Aug 2, 2024 by kheal
1
@kheal
would metref meet our content and format needs as a metabolite namespace?
#2147 opened Jul 24, 2024 by turbomam
@cmungall @lamccue
@kheal @turbomam
1
FileEnumType needs modularization and normalization
#2145 opened Jul 24, 2024 by turbomam
@turbomam
berkeley: Fix range for has_calibration slot
#2139 opened Jul 22, 2024 by kheal
2 tasks
@kheal
range constraint for gene_function_id on Class FunctionalAnnotationAggMember
#2138 opened Jul 19, 2024 by aclum
resume efforts to detect examples coverage
#2137 opened Jul 19, 2024 by turbomam
@turbomam
1
delete assets/yq-for-nmdc_schema_accepting_legacy_ids.txt
#2136 opened Jul 19, 2024 by turbomam
@turbomam
Draft: add details to InstrumentModelEnum
#2133 opened Jul 18, 2024 by mslarae13
document the fact that working on a PR template is the only case in which PRs don't require review
#2126 opened Jul 17, 2024 by turbomam
@mslarae13
1
known_as slot needs description and structured_pattern constraints berkeley-fy24-refactor Label to describe issues created during the December 2023 hackathon for schema refactor
#2121 opened Jul 16, 2024 by kheal
1
MIxS Environmental Context slot grouping
#2119 opened Jul 12, 2024 by aclum
2 tasks
@turbomam
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