Running Common Workflows

Running Common Workflows

A brief demo video on how to run workflows using Cromwell on Azure.

Run Broad Institute of MIT and Harvard's Best Practices Pipelines on Cromwell on Azure:

Data pre-processing for variant discovery

Germline short variant discovery (SNPs + Indels)

Somatic short variant discovery (SNVs + Indels)

RNAseq short variant discovery (SNPs + Indels)

Variant-filtering with Convolutional Neural Networks

Sequence data format conversion

Other WDL examples on Cromwell on Azure:

Cromwell Output Re-Organization