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Running Workflows

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Adina Shanholtz edited this page May 8, 2023 · 2 revisions

Running Workflows Landing Page

Resources for running workflows in Cromwell on Azure.

Example Workflow: Convert FASTQ files to uBAM file
Running Common Workflows
Modifying WDLs for Azure
Managing your workflow
Using cromshell with CoA

Toggle table of contents Pages 41

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Home
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4.0 Migration Guide
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4.0.0 release notes
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4.2.0 release notes
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4.3.0 Release Notes
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4.5.0 Release Notes
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4.6.0 Release Notes
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4.7.0 Re
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4.7.0 Release Notes
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5.0.0 Release Notes
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5.1.0 Release Notes
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5.2.0 Release Notes
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5.2.3 Release Notes
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5.3.0 Release Notes
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5.3.1 Release Notes
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5.3.3 Release Notes
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[Deprecated] Update MySQL in Cromwell on Azure
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Analysis
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Architecture Diagram
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Building the Deployment Executable Yourself
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Cromwell on AKS Instructions and Troubleshooting
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Customizing Your Instance
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Deploy your instance of Cromwell on Azure
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Deployer Command‐line Options
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Example Workflow: Convert FASTQ files to uBAM file
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FAQ And Troubleshooting
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Getting Started
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Known Issues and Mitigation
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Managing Your Workflow
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Manually deploying CoA to an AKS cluster using Helm
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Miscellaneous
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Modifying WDLs for Azure
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Performance & Optimization
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Release Notes and Announcements
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Running Common Workflows
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Running Workflows
- Running Workflows Landing Page
- Resources for running workflows in Cromwell on Azure.
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Services
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Setting up private networking for Cromwell on Azure
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Setup
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Using a batch pool subnet with service endpoints to avoid load balancer charges
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Using cromshell with Cromwell on Azure (kubectl port forwarding)

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Release Notes and Announcements

5.3.0 LATEST
- Migrating from 4.0.0

Getting Started

Deploy Cromwell on Azure
Deploy Private Cromwell on Azure
Building the Deployment Executable Yourself
Architecture Diagram

Running Workflows

Example Workflow: Convert FASTQ files to uBAM file
Running Common Workflows
Modifying WDLs for Azure
Managing your workflow
Using cromshell with CoA

Services

Cromwell on AKS Instructions and Troubleshooting
[Deprecated] Update MySQL in Cromwell on Azure

FAQ and Troubleshooting

Known Issues and Mitigation
Setup
Analysis
Customizing Your Instance
Performance & Optimization
Miscellaneous

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