Better AzureML v2 SDK support, low-priority preemption, pathology improvements
What's Changed
hi-ml-azure
- BUG: Fix broken
--azureml
flag by @peterhessey in #709 - ENH: Allow for distributed jobs in AML SDK v2 by @mebristo in #730
- BUG: Add waiting for job completion for SDK v2 by @ant0nsc in #669
- BUG: Do not remove conda_env argument when submitting with SDK v2 by @ant0nsc in #737
- BUG: Training HelloWorld using AML v2 SDK hangs by @ant0nsc in #741
hi-ml
- ENH: Enable adding additional env variables from container by @kenza-bouzid in #689
- BUG: Retire DATASET_MOUNT_CACHE_SIZE by @kenza-bouzid in #692
- ENH: Add logic to find recovery checkpoints for preempted runs by @ant0nsc in #705
- ENH: Add shadow workflow for hi-ml-pr by @mebristo in #595
- ENH: Reduce logging noise in test suite by @ant0nsc in #718
- ENH: Allow low-priority preemption after training by @ant0nsc in #722
- ENH: Simplify MLRunner Inference by @kenza-bouzid in #734
hi-ml-cpath
- ENH: Upgrade cucim and tiffile by @kenza-bouzid in #691
- ENH: Enable overriding tiling on the fly steps by @kenza-bouzid in #696
- ENH: Add diagnostics tools by @kenza-bouzid in #695
- ENH: Add option to tile a single slide selected by slide id by @maxilse in #707
- Bump wheel from 0.36.2 to 0.38.1 in /hi-ml-cpath by @dependabot in #713
- BUG: Fix slow-path warning in tests that use MockPandaSlidesGenerator by @kenza-bouzid in #717
- ENH: Recreate datamodule for extra validation and inference by @kenza-bouzid in #721
- ENH: Improve Attention Heatmaps plots by @kenza-bouzid in #723
- ENH: Re-enable a test for SSL encoders by @ant0nsc in #726
- ENH: Allow return of intermediate layers from ResNet by @markpinnock in #724
- BUG: Subsample tiles without replacement by @harshita-s in #732
- ENH: Use UnrepeatedDistributedSampler for validation and test by @kenza-bouzid in #743
hi-ml-multimodal
- TEST: Update CI to compute and upload coverage for hi-ml-multimodal by @fepegar in #685
- ENH: Use module-level logger in hi-ml-multimodal by @fepegar in #687
General
- DOC: Refer to CONTRIBUTING for list valid prefixes by @fepegar in #686
- ENH: Improve PR workflows by @ant0nsc in #697
- ENH: Clean up readme file in the template for new projects by @ant0nsc in #702
- Bump setuptools from 59.5.0 to 65.5.1 in /new_project_template by @dependabot in #714
- Bump setuptools from 59.5.0 to 65.5.1 in /hi-ml-multimodal by @dependabot in #715
- Bump wheel from 0.36.2 to 0.38.1 in /new_project_template by @dependabot in #711
- Bump wheel from 0.36.2 to 0.38.1 by @dependabot in #710
- ENH: Simplify makefile targets by @ant0nsc in #728
- ENH: Remove mypy cache folder in
make clean
by @ant0nsc in #735
New Contributors
- @markpinnock made their first contribution in #724
Full Changelog: v0.2.11...v0.2.12