cobrapy-tutorial

A tutorial on cobrapy

Installation instructions for linux

1. Create virtual environemtn virtualenv -p python3 venv/

2. activate the virtual environemtn source venv/bin/activate

3. Install requirments pip install -r requirments.txt

4. Install jupyter kernell pip install ipykernel python -m ipykernel install --user --name=venv

5. Run jupyter jupyter notebook

Do the tutorial without instalations

Run the tutorial notebooks using:

Short cuts for tutorials

• Tutorial 1 - Introduction to cobrapy
• Tutorial 2 - Flux Balance Analysis
• Tutorial 3 - In-silico gene knockout experiments