Skip to content

Commit

Permalink
Update rnaseq.rst
Browse files Browse the repository at this point in the history
  • Loading branch information
chudakovdm authored and dbolotin committed Apr 5, 2018
1 parent 6f408fb commit 7ad62cc
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions doc/rnaseq.rst
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@

.. _ref-rna-seq:

Processing RNA-seq data
Processing RNA-seq and non-targeted genomic data
=======================

.. note::
Expand Down Expand Up @@ -46,7 +46,7 @@ There are only two things you must tell MiXCR for a successfull analysis. Both o

1. **Species.** Using ``-s ...`` parameter. See :ref:`here <ref-align-cli-params>`.

2. **Data source origin**. Genomic or transcriptomic. This affects which part of reference V gene seqeucnes will be used for alignment, with or without intron. By default transcriptomic source is assumed, so no additional parameters have to be specified for an analysis of RNA-Seq data. If your data has a genomic DNA origin add the following option to the ``align`` command:
2. **Data source origin**. Genomic or transcriptomic. This affects which part of reference V gene seqeucnes will be used for alignment, with or without intron. By default transcriptomic source is assumed, so no additional parameters have to be specified for an analysis of RNA-Seq data. If your data has a genomic DNA origin - e.g. whole genome sequencing (WGS) or whole exome sequencing (WES) - add the following option to the ``align`` command:

::

Expand Down

0 comments on commit 7ad62cc

Please sign in to comment.