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CHANGELOG cleanup.
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dbolotin committed Aug 13, 2015
1 parent 8b41bd2 commit 9e906fa
Showing 1 changed file with 9 additions and 12 deletions.
21 changes: 9 additions & 12 deletions CHANGELOG
Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,11 @@ MiXCR 1.3 (13 Aug 2015)
========================

-- new feature: alignments with V and J genes from different loci are dropped (this behaviour can
be turned off by adding '--diff-loci' command line option)
be turned off by adding '--diff-loci' command line option)
-- default parameter value changed: for cloneClusteringParameters.specificMutationProbability value
nged from 1E-4 to 1E-3
changed from 1E-4 to 1E-3
-- default parameter value changed: for cloneClusteringParameters.searchParameters value changed
m `oneMismatch` to `twoMismatchesOrIndels`
from `oneMismatch` to `twoMismatchesOrIndels`
-- bug-fix: overlapping of reads now preserves read description
-- bug-fix: `-descrR2` now outputs information from R2 (was from R1)
-- minor bug-fixed: NPE in VDJCAlignerAbstract
Expand All @@ -16,27 +16,24 @@ be turned off by adding '--diff-loci' command line option)
MiXCR v1.2 (16 Jun 2015)
========================

-- new feature: added ability to export keep read descrptions in .vdjca file
(option '--save-description' for align command and options '-descrR1' and
'-descrR2' for exportAlignments command)
-- new feature: added ability to export keep read descrptions in .vdjca file (option
'--save-description' for align command and options '-descrR1' and '-descrR2' for
exportAlignments command)
-- fixed crash caused by '-OcloneClusteringParameters=null'
-- bug with clonatype ordering in exportClones fixed
(occurred with '-OcloneClusteringParameters=null')

-- bug with clonatype ordering in exportClones fixed (occurred with
'-OcloneClusteringParameters=null')


MiXCR v1.1 (29 Apr 2015)
========================

-- new feature: `exportAlignmentsPretty` action for exporting BLAST-style
alignments
-- new feature: `exportAlignmentsPretty` action for exporting BLAST-style alignments
-- adjust D-gene aligner parameters
-- various performance improvements
-- bash script support for OS X and Linux
-- migration to MiLib 1.0



MiXCR v1.0 (1 Jan 2015)
=======================

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