Fix for exception in default exportClones.

milaboratory · Jan 31, 2017 · c369a10 · c369a10
1 parent 0fcaafd
commit c369a10
Showing 1 changed file with 9 additions and 4 deletions.
diff --git a/src/main/java/com/milaboratory/mixcr/export/FeatureExtractors.java b/src/main/java/com/milaboratory/mixcr/export/FeatureExtractors.java
@@ -31,10 +31,6 @@ void validate(GeneFeature[] features) {
             if (features.length == 2 && !features[1].contains(features[0]))
                 throw new IllegalArgumentException(String.format("%s: Base feature %s does not contain relative feature %s",
                         command, GeneFeature.encode(features[1]), GeneFeature.encode(features[0])));
-            for (GeneFeature feature : features)
-                if (feature.getGeneType() == null)
-                    throw new IllegalArgumentException(String.format("%s: Gene feature %s covers several gene types " +
-                            "(not possible to select corresponding alignment)", command, GeneFeature.encode(feature)));
 
             //todo bigfeature nofloating bounds
         }
@@ -92,6 +88,15 @@ static abstract class MutationsExtractor extends WithHeader {
             super(command, description, nArgs, hPrefix, sPrefix);
         }
 
+        @Override
+        void validate(GeneFeature[] features) {
+            super.validate(features);
+            for (GeneFeature feature : features)
+                if (feature.getGeneType() == null)
+                    throw new IllegalArgumentException(String.format("%s: Gene feature %s covers several gene types " +
+                            "(not possible to select corresponding alignment)", command, GeneFeature.encode(feature)));
+        }
+
         @Override
         protected String extractValue(VDJCObject object, GeneFeature[] parameters) {
             GeneFeature smallGeneFeature = parameters[0];