minimalNOverlap in assemblePartial changed to 7

milaboratory · May 30, 2017 · c58ef6a · c58ef6a
1 parent 339a67f
commit c58ef6a
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diff --git a/CHANGELOG_CURRENT b/CHANGELOG_CURRENT
@@ -1,3 +1,4 @@
 Minimal thresholds added for V and J alignments in `extendAlignments`
+`minimalNOverlap` in `assemblePartial` changed to 7
 Information on k-mer diversity added to alignPartial report file
 Detainls of V/J Extension during extendAlignments are now added to target description, and can be retrieved using `-targetDescriptions` field in `exportAlignments`
diff --git a/src/main/resources/parameters/partial_assembler_parameters.json b/src/main/resources/parameters/partial_assembler_parameters.json
@@ -2,7 +2,7 @@
   "kValue": 12,
   "kOffset": -7,
   "minimalAssembleOverlap": 12,
-  "minimalNOverlap": 5,
+  "minimalNOverlap": 7,
   "minimalAlignmentMergeIdentity": 0.85,
   "mergerParameters": {
     "qualityMergingAlgorithm": "SumSubtraction",