Configure Renovate

[renovate]

Welcome to Renovate! This is an onboarding PR to help you understand and configure settings before regular Pull Requests begin.

🚦 To activate Renovate, merge this Pull Request. To disable Renovate, simply close this Pull Request unmerged.

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Detected Package Files

• Dockerfile (dockerfile)
• pyproject.toml (poetry)

Configuration Summary

Based on the default config's presets, Renovate will:

• Start dependency updates only once this onboarding PR is merged
• Show all Merge Confidence badges for pull requests.
• Enable Renovate Dependency Dashboard creation.
• Use semantic commit type fix for dependencies and chore for all others if semantic commits are in use.
• Ignore node_modules, bower_components, vendor and various test/tests directories.
• Group known monorepo packages together.
• Use curated list of recommended non-monorepo package groupings.
• Apply crowd-sourced package replacement rules.
• Apply crowd-sourced workarounds for known problems with packages.

🔡 Would you like to change the way Renovate is upgrading your dependencies? Simply edit the renovate.json in this branch with your custom config and the list of Pull Requests in the "What to Expect" section below will be updated the next time Renovate runs.

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What to Expect

With your current configuration, Renovate will create 25 Pull Requests:

Update dependency pyre-check to v0.9.18

• Schedule: ["at any time"]
• Branch name: renovate/pyre-check-0.x-lockfile
• Merge into: main
• Upgrade pyre-check to 0.9.18

Update dependency sphinxcontrib-applehelp to v1.0.6

• Schedule: ["at any time"]
• Branch name: renovate/sphinxcontrib-applehelp-1.x-lockfile
• Merge into: main
• Upgrade sphinxcontrib-applehelp to 1.0.6

Update dependency sphinxcontrib-devhelp to v1.0.4

• Schedule: ["at any time"]
• Branch name: renovate/sphinxcontrib-devhelp-1.x-lockfile
• Merge into: main
• Upgrade sphinxcontrib-devhelp to 1.0.4

Update dependency sphinxcontrib-qthelp to v1.0.5

• Schedule: ["at any time"]
• Branch name: renovate/sphinxcontrib-qthelp-1.x-lockfile
• Merge into: main
• Upgrade sphinxcontrib-qthelp to 1.0.5

Update dependency sphinxcontrib-serializinghtml to v1.1.7

• Schedule: ["at any time"]
• Branch name: renovate/sphinxcontrib-serializinghtml-1.x-lockfile
• Merge into: main
• Upgrade sphinxcontrib-serializinghtml to 1.1.7

Update dependency Sphinx to v4.5.0

• Schedule: ["at any time"]
• Branch name: renovate/sphinx-4.x-lockfile
• Merge into: main
• Upgrade Sphinx to 4.5.0

Update dependency biopython to v1.81

• Schedule: ["at any time"]
• Branch name: renovate/biopython-1.x-lockfile
• Merge into: main
• Upgrade biopython to 1.81

Update dependency black to v22.12.0

• Schedule: ["at any time"]
• Branch name: renovate/black-22.x-lockfile
• Merge into: main
• Upgrade black to 22.12.0

Update dependency click to v8.1.6

• Schedule: ["at any time"]
• Branch name: renovate/click-8.x-lockfile
• Merge into: main
• Upgrade click to 8.1.6

Update dependency ipython to v8.14.0

• Schedule: ["at any time"]
• Branch name: renovate/ipython-8.x-lockfile
• Merge into: main
• Upgrade ipython to 8.14.0

Update dependency isort to v5.12.0

• Schedule: ["at any time"]
• Branch name: renovate/isort-5.x-lockfile
• Merge into: main
• Upgrade isort to 5.12.0

Update dependency mypy to v0.991

• Schedule: ["at any time"]
• Branch name: renovate/mypy-0.x-lockfile
• Merge into: main
• Upgrade mypy to 0.991

Update dependency p-tqdm to v1.4.0

• Schedule: ["at any time"]
• Branch name: renovate/p-tqdm-1.x-lockfile
• Merge into: main
• Upgrade p-tqdm to 1.4.0

Update dependency pandas to v1.5.3

• Schedule: ["at any time"]
• Branch name: renovate/pandas-1.x-lockfile
• Merge into: main
• Upgrade pandas to 1.5.3

Update dependency pyfaidx to ^0.7.0

• Schedule: ["at any time"]
• Branch name: renovate/pyfaidx-0.x
• Merge into: main
• Upgrade pyfaidx to ^0.7.0

Update dependency regex to v2022.10.31

• Schedule: ["at any time"]
• Branch name: renovate/regex-2022.x-lockfile
• Merge into: main
• Upgrade regex to 2022.10.31

Update dependency requests to v2.31.0

• Schedule: ["at any time"]
• Branch name: renovate/requests-2.x-lockfile
• Merge into: main
• Upgrade requests to 2.31.0

Update dependency sphinx-rtd-theme to v1.2.2

• Schedule: ["at any time"]
• Branch name: renovate/sphinx-rtd-theme-1.x-lockfile
• Merge into: main
• Upgrade sphinx-rtd-theme to 1.2.2

Update dependency tqdm to v4.66.1

• Schedule: ["at any time"]
• Branch name: renovate/tqdm-4.x-lockfile
• Merge into: main
• Upgrade tqdm to 4.66.1

Update dependency Sphinx to v7

• Schedule: ["at any time"]
• Branch name: renovate/sphinx-7.x
• Merge into: main
• Upgrade Sphinx to ^7.0.0

Update dependency black to v23

• Schedule: ["at any time"]
• Branch name: renovate/black-23.x
• Merge into: main
• Upgrade black to ^23.0.0

Update dependency flake8 to v6

• Schedule: ["at any time"]
• Branch name: renovate/flake8-6.x
• Merge into: main
• Upgrade flake8 to ^6.0.0

Update dependency mypy to v1

• Schedule: ["at any time"]
• Branch name: renovate/mypy-1.x
• Merge into: main
• Upgrade mypy to ^1.0.0

Update dependency pandas to v2

• Schedule: ["at any time"]
• Branch name: renovate/pandas-2.x
• Merge into: main
• Upgrade pandas to ^2.0.0

Update dependency regex to v2023

• Schedule: ["at any time"]
• Branch name: renovate/regex-2023.x
• Merge into: main
• Upgrade regex to ^2023.0.0

🚸 Branch creation will be limited to maximum 2 per hour, so it doesn't swamp any CI resources or overwhelm the project. See docs for prhourlylimit for details.

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❓ Got questions? Check out Renovate's Docs, particularly the Getting Started section.
If you need any further assistance then you can also request help here.

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