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Pandas utilities for tab-delimited and other genomic data files
a modular Hi-C mapping pipeline
A cool place to store your Hi-C
A new version of openmm-polymer
The tools for your .cool's
Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"
CLI tools to process mapped Hi-C data
Utilities for working with 3-point contact matrices
Read, write and analyse Hi-C pairs
A legacy repository. Was replaced by distiller, cooler, and cooltools.
Utility module for using nglview to visualize stuff
A legacy repository. Useful functionality was ported to cooltools.lib.numutils.
A legacy repository. Was replaced by polychrom.
Cooler demo using a Jupyter notebook Binder
Gillespie simulations of advantageous drivers & deleterious passengers in cancer
Test data for distiller
a legacy repo to avoid breaking existing pipelines
a Snakemake version of distiller (deprecated!)