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Showing 10 of 16 repositories
- GenomeArchitectureAndFunction2023 Public
Materials for the workshop at Genome Architecture and Function 2023 Workshop
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- heterochromatin-paper Public
- moving-barriers-paper Public
Simulation and analysis codes used in Banigan*, Tang*, van den Berg* et al. Transcription shapes 3D chromatin organization by interacting with loop-extruding cohesin complexes, bioRxiv (2021)
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- one_sided_extrusion Public
Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"
- TMB_analysis Public
R code and data for "Limited evidence of tumour mutational burden as a biomarker of response to immunotherapy", C Gurjao et al., 2020
- Open2C Public
Community software repositories (cooler, cooltools, pairtools, distiller, polychrom, bioframe, and others) now live at https://github.com/open2c