use NexusParser not NexusFile

Rakefile

@@ -5,12 +5,12 @@ begin
   require 'jeweler'
   Jeweler::Tasks.new do |gem|
     gem.name = "nexus_parser"
-    gem.summary = %Q{TODO: one-line summary of your gem}
-    gem.description = %Q{TODO: longer description of your gem}
+    gem.summary = %Q{A Nexus file format (phylogenetic inference) parser in Ruby.}
+    gem.description = %Q{A full featured and extensible Nexus file parser in Ruby. }
     gem.email = "diapriid@gmail.com"
     gem.homepage = "http://github.com/mjy/nexus_parser"
     gem.authors = ["mjy"]
-    gem.add_development_dependency "thoughtbot-shoulda", ">= 0"
+    # gem.add_development_dependency "thoughtbot-shoulda", ">= 0"
     # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
   end
   Jeweler::GemcutterTasks.new

nexus_parser.gemspec

@@ -0,0 +1,60 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{nexus_parser}
+  s.version = "1.0.0"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["mjy"]
+  s.date = %q{2010-03-17}
+  s.description = %q{A full featured and extensible Nexus file parser in Ruby. }
+  s.email = %q{diapriid@gmail.com}
+  s.extra_rdoc_files = [
+    "LICENSE",
+     "README",
+     "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+     ".gitignore",
+     "LICENSE",
+     "MIT-LICENSE",
+     "README",
+     "README.rdoc",
+     "Rakefile",
+     "VERSION",
+     "init.rb",
+     "install.rb",
+     "lib/lexer.rb",
+     "lib/nexus_file.rb",
+     "lib/parser.rb",
+     "lib/tokens.rb",
+     "tasks/nexus_parser_tasks.rake",
+     "test/MX_test_03.nex",
+     "test/test.nex",
+     "test/test_nexus_parser.rb",
+     "uninstall.rb"
+  ]
+  s.homepage = %q{http://github.com/mjy/nexus_parser}
+  s.rdoc_options = ["--charset=UTF-8"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.6}
+  s.summary = %q{A Nexus file format (phylogenetic inference) parser in Ruby.}
+  s.test_files = [
+    "test/test_nexus_parser.rb"
+  ]
+
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
+    else
+    end
+  else
+  end
+end
+