Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Make cryodrgn analyze produce a plot of the learning curve, fix #304 #309

Merged
merged 3 commits into from
Nov 13, 2023

Conversation

Guillawme
Copy link
Contributor

Hello,

Here is an addition to cryodrgn analyze: it now writes a PNG file with a plot of the learning curve. This addresses #304.
The resulting plot is not super pretty, but its main goal is to make users think about convergence without having to run the Jupyter notebook.

learning_curve_epoch29

I hope this will be helpful.

@Guillawme
Copy link
Contributor Author

I also updated the Jupyter notebook templates so that the learning curve plots in them match the one produced by cryodrgn analyze.

Copy link
Collaborator

@michal-g michal-g left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

ran analyze with the new code and successfully produced the new plots

@michal-g michal-g merged commit b5d9e4b into ml-struct-bio:main Nov 13, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants