check #914
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| on: | |
| push: | |
| branches: [master, devel] | |
| pull_request: | |
| branches: [master, devel] | |
| schedule: | |
| - cron: '33 4 * * *' # work 4:33 in the morning | |
| name: check | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| WARNINGS_ARE_ERRORS: 1 | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_TESTS_NLINES_: 0 # disable limiting of output lines | |
| _R_CHECK_CRAN_INCOMING_: false | |
| jobs: | |
| check: | |
| defaults: | |
| run: | |
| shell: bash | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false # continue runs even when a parallel run failed | |
| matrix: | |
| # run on ubuntu, macos, windows. 20.04 is more recent than ubuntu-latest, currently. | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| action: [check] | |
| r: [release] | |
| include: | |
| # additionally run r-devel, but only on ubuntu, and an old R version on an old ubuntu | |
| - os: ubuntu-latest | |
| action: check | |
| r: devel | |
| - os: ubuntu-20.04 | |
| action: check | |
| r: '4.1' | |
| - os: ubuntu-latest | |
| action: coverage | |
| r: release | |
| - os: ubuntu-latest | |
| action: githubversions | |
| r: release | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.r }} | |
| - if: runner.os == 'Linux' | |
| name: apt-get update | |
| run: sudo apt-get update | |
| - name: Install curl for Ubuntu | |
| # necessary for pkgdown & covr, so we do that on ubuntu-latest / R release only | |
| if: ${{ matrix.r == 'release' && matrix.os == 'ubuntu-latest' }} | |
| run: sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2-branch | |
| - name: Create Cache Key | |
| shell: Rscript {0} | |
| run: | | |
| if (!require("remotes", quietly = TRUE)) install.packages("remotes") | |
| writeLines(capture.output(print(remotes::dev_package_deps())), ".github/deps.txt") | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-${{ steps.install-r.outputs.installed-r-version }}-${{ hashFiles('.github/deps.txt') }} | |
| - shell: Rscript {0} | |
| name: install necessary build env packages | |
| run: for (req in c("remotes", "roxygen2", "covr", "pkgdown")) if (!require(req, quietly = TRUE)) install.packages(req) | |
| - if: runner.os == 'Linux' | |
| name: install system requirements | |
| run: | | |
| while read -r depinst ; do | |
| echo "> $depinst" | |
| eval sudo $depinst | |
| done < <( Rscript -e "writeLines(remotes::system_requirements('ubuntu', '$( . /etc/os-release ; echo $VERSION_ID )'))") | |
| - shell: Rscript {0} | |
| name: install package dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| - name: install github versions | |
| if: ${{ matrix.action == 'githubversions' }} | |
| shell: Rscript {0} | |
| run: | | |
| system("sudo apt-get install libhiredis-dev") | |
| remotes::install_github("mlr-org/paradox") | |
| remotes::install_github("mlr-org/bbotk") | |
| remotes::install_github("mlr-org/mlr3tuning") | |
| - name: Session Info | |
| shell: Rscript {0} | |
| run: | | |
| options(width = 200) | |
| installed.packages()[, c("Package", "Version", "Built")] | |
| sessionInfo() | |
| - name: Document | |
| shell: Rscript {0} | |
| run: | | |
| roxygen2::roxygenise() | |
| system("attic/clean_man.sh") | |
| - if: runner.os == 'windows' | |
| name: Remove hypertarget from Latex for Windows | |
| run: "sed -i 's/\\\\hypertarget{[^}]*}//g' man/*" | |
| - if: runner.os == 'windows' | |
| name: Install tinytex packages | |
| shell: Rscript {0} | |
| run: | | |
| library(tinytex) | |
| tlmgr_version() | |
| tlmgr_update() | |
| tlmgr_install('collection-latexrecommended') | |
| tlmgr_install('collection-fontsrecommended') | |
| tlmgr(c('list', '--only-installed')) | |
| - name: Build | |
| if: ${{ matrix.action != 'coverage' }} | |
| working-directory: .. | |
| run: 'R CMD build */' | |
| - name: Check | |
| if: ${{ matrix.action != 'coverage' }} | |
| working-directory: .. | |
| run: 'R CMD check --as-cran --run-donttest *.tar.gz' | |
| - name: Coverage | |
| if: ${{ matrix.action == 'coverage' }} | |
| shell: Rscript {0} | |
| run: covr::codecov(quiet = FALSE, type = "tests") | |
| - name: install | |
| if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' }} | |
| working-directory: .. | |
| run: 'R CMD INSTALL *.tar.gz' | |
| - name: Build Docs | |
| if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' }} | |
| shell: Rscript {0} | |
| run: | | |
| pkgdown::build_site() | |
| roxygen2::roxygenise() | |
| tools::buildVignettes(dir = ".") | |
| - name: Deploy Docs | |
| if: ${{ matrix.action != 'coverage' && matrix.os == 'ubuntu-20.04' && matrix.r == 'release' && github.ref == 'refs/heads/master' }} | |
| run: | | |
| git config --local user.name "github-actions[bot]" | |
| git config --local user.email "mb706@users.noreply.github.com" | |
| git checkout --orphan gh-pages | |
| git --work-tree=docs add --all | |
| git --work-tree=docs commit -m "gh-pages" | |
| git push origin HEAD:gh-pages --force | |
| - name: Install Log | |
| if: ${{ failure() }} | |
| working-directory: .. | |
| run: 'cat *.Rcheck/00install.out' | |
| - name: Check Log | |
| if: ${{ failure() }} | |
| working-directory: .. | |
| run: 'cat *.Rcheck/00check.log' | |
| - name: Latex Log | |
| if: ${{ failure() }} | |
| working-directory: .. | |
| run: 'cat *.Rcheck/Rdlatex.log' | |