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Prep conduit manuscript #166

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Prep conduit manuscript #166

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Commits on Oct 20, 2023

  1. Prototype new analyses/methods

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  2. Switch Docker from git:// to https://

    @mmore500
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  3. Replace OLS regression, fixup rest of metrics

    @mmore500
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  4. Disable git safe directory 

    Cause of "dubious ownership" error on GH actions deploy
    @mmore500
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  5. Add suggested git safe dir except

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  6. Try setting git safedir in CI step

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Commits on Oct 31, 2023

  1. Catch median ValueError and warn

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  2. Impl, test performance-semantics plot

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Commits on Nov 1, 2023

  1. Remove redundant code

    @mmore500
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  2. Polish perforamce-semantics plot design

    @mmore500
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Commits on Nov 3, 2023

  1. Implement, test hash_with_lax_fallback

    @mmore500
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  2. Implement, test UnequalSentinel

    @mmore500
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  3. Implement, test lru_cache_universal

    @mmore500
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  4. Impl, test seaborn kde-caching monkeypatch

    @mmore500
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  5. Bugfix: don't override hue_order

    @mmore500
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Commits on Nov 5, 2023

  1. Fix bad __all__ in __init__

    @mmore500
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  2. Impl, test round_to_multiple util

    @mmore500
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  3. Bugfix: use robust equals for Pandas support

    @mmore500
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  4. Implement, test splice

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  5. Impl, test compact_xaxis_units

    @mmore500
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  6. Break out kde fill, prep for facet figure

    @mmore500
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Commits on Nov 6, 2023

  1. Rename to performance_semantics_{kde,scatter}plot

    @mmore500
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  2. Fix func name axis_limits -> axis_lims

    @mmore500
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  3. Switch default palette to gold/purple/teal

    @mmore500
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  4. Fixup hue_order setup and checks

    @mmore500
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  5. Take legend font path by arg

    @mmore500
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  6. Impl performance-semantics facetplot composite

    @mmore500
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  7. Set editorconfig python indent 2 -> 4

    @mmore500
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  8. Bugfix: show smear unflagged should hide smear

    @mmore500
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  9. Reflow overlength comment

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Commits on Nov 9, 2023

  1. Update smear default styling

    @mmore500
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  2. Impl, test pickle_cache

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Commits on Nov 10, 2023

  1. Implement data wrangling helpers

    @mmore500
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  2. Implement beleaguerment regplot

    @mmore500
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  3. Make equals_by_value support nested lists and dict

    @mmore500
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  4. Implement beleaguerment facetplot

    @mmore500
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  5. Bugfix: use hue_order in beleaguerment viz

    @mmore500
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  6. Add lac 417 beleaguerment notebook

    @mmore500
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  7. Implement apply_symmetric_axes helper

    @mmore500
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  8. Bugfix: missing -1 to longitudinal bunching calc

    @mmore500
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  9. Alias new bunchiness metric to clumpiness, etc.

    @mmore500
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  10. Apply black format

    @mmore500
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  11. Impl runtime indicator regplot, pairplot

    @mmore500
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  12. Impl, test perruntime indicators concat

    @mmore500
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  13. Commit missing instrumentation wrangling content

    @mmore500
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  14. Fix smear errorbar calculation

    @mmore500
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  15. Make performance semantics notebook

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  16. Fixup beleaguerment notebook

    @mmore500
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  17. Handle desserial except in pickle_cache 

    e.g., due to package version changes
    @mmore500
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  18. Factor out copy/paste spam from lac-417 nb

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  19. Update python requirements, fiddle with pins

    @mmore500
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  20. Pin older bidict that docker build can find

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  21. Put venv on Docker path to upgrade python to 3.8

    @mmore500
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  22. Try installing packages and curling gpg key

    @mmore500
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  23. Try another Docker setup strategy

    @mmore500
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  24. Try adding deadsnames with RUN command

    @mmore500
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  25. Bump ubuntu 18 -> 20

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  26. Fix Dockerfile syntax error

    @mmore500
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  27. Drop python3.8 sideload, it's default on ubuntu 20

    @mmore500
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  28. Try an amd64 digest

    @mmore500
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  29. Update apt packages ubuntu 18 -> 20

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  30. Try using aptitude to fix apt versioning issue

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  31. Remove special install for newer git

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  32. Try installing software-properties-common with apt

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  33. Try installing compilers directly, not through ppa

    @mmore500
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  34. Install git with apt not aptitude

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  35. Try removing deletion of updates repositories

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  36. Try cache clean to fix npm crash

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  37. Try fix npm crash with manual semver install

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  38. Try pinning semver and reinitializing path

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  39. Bump numpy back to provide statsmodels MachAr

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Commits on Nov 11, 2023

  1. Drop back mplotlib pin for pandas compat

    @mmore500
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  2. Delete unneeded Dockerfile content

    @mmore500
    mmore500 committed Nov 11, 2023
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  3. Strip out dead code

    @mmore500
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  4. Create intra/internode beleaguerment notebook

    @mmore500
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  5. Hide regplot artifacts from summary panel

    @mmore500
    mmore500 committed Nov 11, 2023
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  6. Fix bad column aliasing

    @mmore500
    mmore500 committed Nov 11, 2023
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  7. Fixup imports

    @mmore500
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Commits on Nov 12, 2023

  1. Bugfix: handle case where hue not provided

    @mmore500
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  2. Implement DrawBatched functor

    @mmore500
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  3. Impl open_dymmy_axis context

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  4. Apply column alias incl/excl lac417

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  5. Restyle beleaguerment plots

    @mmore500
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  6. Restyle performance semantics scatter

    @mmore500
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  7. Add computation/communication beleaguerment nb

    @mmore500
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  8. Set max_line_length in editorconfig

    @mmore500
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  9. fixup! Restyle performance semantics scatter

    @mmore500
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  10. Fix whitespace

    @mmore500
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  11. Remove unnecessary dropna

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Commits on Nov 13, 2023

  1. Fix kwarg linewidth -> linewidths

    @mmore500
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  2. Fix missing column key error

    @mmore500
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Commits on Nov 14, 2023

  1. Bugfix: remember to unpack kwargs

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  2. Bugfix: prevent and handle zero batches case

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Commits on Nov 18, 2023

  1. Add comp vs com beleaguerment nb

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  2. Add thread vs proc beleaguerment nb

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Commits on Nov 19, 2023

  1. Fix copy/paste nb name

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  2. Add weak scaling beleaguerment nb

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  3. Fix copy/paste name

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  4. Bugfix: ps kdeplot should respect hue_order

    @mmore500
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  5. Bugfix: use linewidth kwarg, not linewidths

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  6. Add inter/intranode psp nb

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  7. Fix copy/paste nb name

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  8. Add multithread/proc psp notebook

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  9. Handle orders of magnitude % 3 != 0

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  10. Add fourth entry to style carousel

    @mmore500
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  11. Fix style handling in perf semantics plots

    @mmore500
    mmore500 committed Nov 19, 2023
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  12. Style code

    @mmore500
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  13. Take and forward subplot kwargs

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  14. Add option to disable shared x/y axis scales

    @mmore500
    mmore500 committed Nov 19, 2023
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  15. Fork clean notebook operations for speedup

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  16. Add comp vs comm ps plot notebook

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  17. Add weak scaling performance semantics nb

    @mmore500
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  18. Remove unused copy/paste cruft

    @mmore500
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  19. Alphabetize kwargs

    @mmore500
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Commits on Nov 20, 2023

  1. Exclude outliers and mark on axis edges

    @mmore500
    mmore500 committed Nov 20, 2023
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  2. Improve off-axis outlier annotation

    @mmore500
    mmore500 committed Nov 20, 2023
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  3. Add marker helper (not currently used)

    @mmore500
    mmore500 committed Nov 20, 2023
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Commits on Nov 30, 2023

  1. Set higher keyname chop threshold

    @mmore500
    mmore500 committed Nov 30, 2023
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  2. Disable notebook causing timeout

    @mmore500
    mmore500 committed Nov 30, 2023
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  3. Bump keyname version for bugfix

    @mmore500
    mmore500 committed Nov 30, 2023
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  4. Try parallelizing the notebook job with larger runner

    @mmore500
    mmore500 committed Nov 30, 2023
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  5. Pin notebook container to skip build-per-commit

    @mmore500
    mmore500 committed Nov 30, 2023
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  6. Revert "Try parallelizing the notebook job with larger runner" 

    This reverts commit 8559cff.
    @mmore500
    mmore500 committed Nov 30, 2023
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  7. Try parallelizing the notebook job with larger runner

    @mmore500
    mmore500 committed Nov 30, 2023
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  8. Pin notebook container to skip build-per-commit

    @mmore500
    mmore500 committed Nov 30, 2023
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  9. Revert "Try parallelizing the notebook job with larger runner" 

    This reverts commit 8559cff.
    @mmore500
    mmore500 committed Nov 30, 2023
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  10. Use non-recursive approach to parallelize nb execution

    @mmore500
    mmore500 committed Nov 30, 2023
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  11. Don't use source inside container, clone it instead

    @mmore500
    mmore500 committed Nov 30, 2023
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  12. Drop build dependency

    @mmore500
    mmore500 committed Nov 30, 2023
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  13. Remove broken pip install

    @mmore500
    mmore500 committed Nov 30, 2023
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  14. Fix execute notebook nb discovery recursion

    @mmore500
    mmore500 committed Nov 30, 2023
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  15. Disable broken notebook

    @mmore500
    mmore500 committed Nov 30, 2023
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  16. Try staying in root directory

    @mmore500
    mmore500 committed Nov 30, 2023
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  17. Run git repo/user setup on deploy

    @mmore500
    mmore500 committed Nov 30, 2023
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  18. Fix safe directory exception

    @mmore500
    mmore500 committed Nov 30, 2023
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  19. Bugfix: mark current directory safe for git

    @mmore500
    mmore500 committed Nov 30, 2023
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  20. Try setting safe directory to glob

    @mmore500
    mmore500 committed Nov 30, 2023
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  21. Re-enable notebook evaluation

    @mmore500
    mmore500 committed Nov 30, 2023
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  22. Try setting KEYNAME_CHOP_CHUNK_SIZE inside eval job

    @mmore500
    mmore500 committed Nov 30, 2023
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  23. Bump keyname pin for better error diagnostics

    @mmore500
    mmore500 committed Nov 30, 2023
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  24. Bump container for newer python deps

    @mmore500
    mmore500 committed Nov 30, 2023
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  25. Disable broken notebook

    @mmore500
    mmore500 committed Nov 30, 2023
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  26. Add ghostscript to container

    @mmore500
    mmore500 committed Nov 30, 2023
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  27. Bump container pin to get ghostscript

    @mmore500
    mmore500 committed Nov 30, 2023
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  28. Restore notebook, wasn't broken

    @mmore500
    mmore500 committed Nov 30, 2023
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