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[MNT] Improve packaging, managing of dependencies, and managing of ignored warning/errors #88

Merged
merged 176 commits into from
Aug 5, 2022
Merged

[MNT] Improve packaging, managing of dependencies, and managing of ignored warning/errors #88

merged 176 commits into from
Aug 5, 2022

Commits on Aug 1, 2022

  1. migrate to pyproject.toml

    @mscheltienne
    mscheltienne committed Aug 1, 2022
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  2. handle version

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  3. drop manifest since tarball does not need any files outside mne_icalabel

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  4. include iclabel network weights

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  5. simpler setup.py

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  6. run draft-pdf only on push with changes to the paper

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  7. add style check in separate workflow through github actions, remove a… 

    …ll ignore words
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  8. remove configuration for mypy

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  9. fix typos

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  10. fix typo

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  11. fix flake8

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  12. fix codespell

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  13. don't create file for a single word to ignore

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  14. Revert "don't create file for a single word to ignore" 

    This reverts commit faee59d.
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  15. try again

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  16. debug

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  17. fix codespell

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  18. match only mne_icalabel for pydocstyle

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  19. minimal mypy configuration

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  20. add # type: ignore

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  21. rework build test and run on windows as well

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  22. move style back to main workflow file

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  23. test without qt for build

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  24. rename build workflow

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  25. try mypy action

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  26. clean-up pytest workflow

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  27. fix typo

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  28. fix typo

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Commits on Aug 2, 2022

  1. update build ci

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  2. test if ci fails

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  3. Revert "test if ci fails" 

    This reverts commit b4d57e2.
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  4. try with no underscore?

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  5. ci improvements

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  6. upload to codecov only with one CI

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  7. try again

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  8. simpler

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  9. small improvements

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  10. better

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  11. fix require_version until 1.1 is released

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  12. simplify gui tests

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  13. better error message

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  14. simplify ci for now

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  15. remove some testing req.

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  16. better

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  17. better handling of coverage

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  18. cache the testing dataset

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  19. fix issues

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  20. fix pytest config

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  21. cache also mne-icalabel testing dataset

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  22. comment

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  23. run isort

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  24. better test

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  25. fix import of dataset

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  26. import features in package __init__

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  27. and annotation

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  28. run mne-main only on ubuntu to reduce number of jobs

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  29. remove setup.cfg

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  30. simpler matrix

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  31. retrieve and setup xvfb for ubuntu

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  32. move gui req. to separate key

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  33. fix missed

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  34. fix typo

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  35. try again

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  36. make it executable

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Commits on Aug 3, 2022

  1. Merge branch 'main' into setup

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  2. update docbuild

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  3. debug

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  4. try to run Xvfb via action

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  5. test with pg_app

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  6. try to install qt5 dep

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  7. better

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  8. add pytest dep

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  9. remve pytest-xvfb

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  10. cleaning one by one: pytest-qt

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  11. cleaning one-by-one: pydocstyle, pymatreader

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  12. revert pymatreader

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  13. cleaning one-by-one: pytest-harvest

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  14. cleaning one-by-one: pytest-timeout

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  15. set pooch as base dep.

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  16. try without "

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  17. remove empty lines

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  18. move matplotlib to gui dep.

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  19. clean-up comments

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  20. try without Xvfb

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  21. revert, Xvfb is needed as it should be

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  22. try without conftest.py

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  23. disable cache

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  24. fix typos

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  25. Revert "fix typos" 

    This reverts commit a9f8795.
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  26. Revert "disable cache" 

    This reverts commit 15e12c4.
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  27. Revert "try without conftest.py" 

    This reverts commit cd5f502.
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  28. try without unused matplotlib fixtures

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  29. try without markers

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  30. try with empty pytest_configure

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  31. drop conftest.py again

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  32. debug

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  33. add missing __init__.py

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  34. Revert "debug" 

    This reverts commit 69f7083.
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  35. fix caching of the datasets (stable retrieved 0.132 while main retrie… 

    …ved 0.138)
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  36. Cleanup circle

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  37. Try again

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  38. Add this

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  39. Try again?

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  40. bump mne req to 1.1

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  41. Try again

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  42. use qt6 in CIs

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  43. use -yq flag to uninstall and suppress verbosity

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  44. remove requires_version (fixed in mne 1.1)

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  45. remove 1.0 fixes from topomap

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  46. remove requires_version from gui tests

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  47. Merge branch 'setup' of https://github.com/mscheltienne/mne-icalabel … 

    …into setup
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  48. try with python3-pyqt6

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  49. typo

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  50. revert to qt5 for tests

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  51. try apt-get

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  52. defaultS -> default ...

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  53. Try circle again

    @adam2392
    adam2392 committed Aug 3, 2022
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  54. Merge branch 'setup' of github.com:mscheltienne/mne-icalabel into setup

    @adam2392
    adam2392 committed Aug 3, 2022
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  55. Try circle again

    @adam2392
    adam2392 committed Aug 3, 2022
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  56. Add checkout

    @adam2392
    adam2392 committed Aug 3, 2022
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  57. Add checkout

    @adam2392
    adam2392 committed Aug 3, 2022
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  58. Fix install for circleci

    @adam2392
    adam2392 committed Aug 3, 2022
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  59. Try again

    @adam2392
    adam2392 committed Aug 3, 2022
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  60. Try again

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Commits on Aug 4, 2022

  1. replace scikit-learn doc dep. with ICA key

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  2. minor changes

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  3. fix makefile

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  4. remove non-existent file

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  5. simpler

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  6. use qt5 in doc build

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  7. remove debug

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  8. remove set -e

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  9. split debug information and add caching of the MNE sample dataset

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  10. revert caching of the sample datasets as examples are not always rend… 

    …ered
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  11. does pattern.txt exists?

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  12. nope it does not

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  13. remove setup of xvfb

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  14. Revert "remove setup of xvfb" 

    This reverts commit 5b9f152.
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  15. what about qt5-default

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  16. try without ffmpeg

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  17. add back set -e to exit upon error and remove mne_icalabel_data direc… 

    …tory
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  18. add names to cache operations

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  19. fix linkcheck

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  20. add ls to debug

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  21. more debug

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  22. does circle support xvfb natively?

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  23. what about xvfb-run?

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  24. Revert "what about xvfb-run?" 

    This reverts commit 08a4d6a.
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  25. Revert "does circle support xvfb natively?" 

    This reverts commit a9bfc90.
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  26. remove display

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  27. use apt instead of apt-get

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  28. Revert "remove display" 

    This reverts commit 873507e.
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  29. fix dep. for doc build

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  30. remove forgotten debug lines

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  31. remove unused memory_profiler

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  32. Revert "remove unused memory_profiler" 

    This reverts commit 1d574fb.
    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  33. Update CIs

    @adam2392
    adam2392 committed Aug 4, 2022
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  34. Try again

    @adam2392
    adam2392 committed Aug 4, 2022
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  35. Fix template and ci

    @adam2392
    adam2392 committed Aug 4, 2022
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  36. Fix circleci

    @adam2392
    adam2392 committed Aug 4, 2022
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  37. Fix circleci

    @adam2392
    adam2392 committed Aug 4, 2022
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  38. Fix nameing

    @adam2392
    adam2392 committed Aug 4, 2022
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  39. Upgrade image

    @adam2392
    adam2392 committed Aug 4, 2022
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  40. Upgrade image

    @adam2392
    adam2392 committed Aug 4, 2022
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  41. Fix style

    @adam2392
    adam2392 committed Aug 4, 2022
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  42. upload artifacts right after building

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  43. try with codecov pinged on python 3.9 build

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  44. install only once

    @mscheltienne
    mscheltienne committed Aug 4, 2022
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  45. Clean make

    @adam2392
    adam2392 committed Aug 4, 2022
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  46. Modify install page

    @adam2392
    adam2392 committed Aug 4, 2022
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  47. Try codecov again

    @adam2392
    adam2392 committed Aug 4, 2022
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Commits on Aug 5, 2022

  1. use latest isort action

    @mscheltienne
    mscheltienne committed Aug 5, 2022
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  2. fix readme

    @mscheltienne
    mscheltienne committed Aug 5, 2022
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  3. fix workflow name

    @mscheltienne
    mscheltienne committed Aug 5, 2022
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  4. better install doc

    @mscheltienne
    mscheltienne committed Aug 5, 2022
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  5. add additional skip folders to codespell action

    @mscheltienne
    mscheltienne committed Aug 5, 2022
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