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MRG, ENH: Add infant template downloader #8738

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merged 3 commits into from Jan 20, 2021
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Adds infant templates from NeuroImage

cc @christian-oreilly

@christian-oreilly
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Thanks for this PR @larsoner. Checking out a copy of this PR and trying mne.datasets.fetch_infant_template("2wk") works well on my side! Next week, I need to show a student how to do source reconstruction on infants EEG so I will test this feature more thoroughly at this time. I will let you know if I observe any issues during this process.

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I need to show a student how to do source reconstruction on infants EEG

@christian-oreilly feel free to comment on the new narrative doc with better wording, etc:

https://24496-1301584-gh.circle-artifacts.com/0/dev/auto_tutorials/source-modeling/plot_eeg_no_mri.html#infant-mri-surrogates

If you know of a publicly available infant EEG dataset that we could use, then it could probably be a nice standalone tutorial, too.

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@agramfort I think this one is good to go. I and a couple other folks at ILABS have used it thus far. It tracks version 0.1 of the dataset, and if there are further changes, we can update our definitions/lists.

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merge when happy

thx

Co-authored-by: Daniel McCloy <dan@mccloy.info>
@larsoner larsoner merged commit 5f17b35 into mne-tools:master Jan 20, 2021
@larsoner larsoner deleted the infant branch January 20, 2021 13:18
larsoner added a commit to vpeterson/mne-python that referenced this pull request Feb 25, 2021
* upstream/master: (66 commits)
  MRG, ENH: Add infant template downloader (mne-tools#8738)
  ENH: add reader for NeuroElectrics .nedf files (mne-tools#8734)
  DOC: improve glossary entry about fiducials (mne-tools#8763)
  MRG, ENH: Add Report.add_custom_css (mne-tools#8762)
  BUG, DOC: read_raw_egi didn't support pathlib.Path; update read_raw() docstring (mne-tools#8759)
  Add "dbs" as new channel type (mne-tools#8739)
  MRG, VIZ: Fix title position in plot_sensors (mne-tools#8752)
  MRG: Support for non-FIFF files in Report.parse_folder (mne-tools#8744)
  MRG, VIZ, FIX: sEEG picking in _prepare_topomap_plot() (mne-tools#8736)
  DOC: don't use single letter variable name in _compute_forward (mne-tools#8727)
  WIP: Fix search [skip github] [skip azp] (mne-tools#8742)
  WIP: Compare Beer-lambert to HOMER (mne-tools#8711)
  MRG: bump spyder version (mne-tools#8020)
  FIX anon with IO round trip (mne-tools#8731)
  fix set_bipolar_reference for Epochs (mne-tools#8728)
  WIP: Add width argument, reduce default (mne-tools#8725)
  ENH: Add toggle-all button to Report (mne-tools#8723)
  fix int/float conversion in nicolet header (mne-tools#8712)
  MRG, BUG: Fix Report.add_bem_to_section n_jobs != 1 (mne-tools#8713)
  MRG, DOC: Make "rank" options in docs more accessible (mne-tools#8707)
  ...
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4 participants