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Methods

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mojaveazure edited this page May 17, 2016 · 18 revisions

These are the methods included with angsd-wrapper. Entries marked with * can be visualized with the Shiny graphing application.

Fst Estimations

Admixture Analysis*

Ancestral Sequence

Genotype Likelihoods

Inbreeding Coefficients

Principle Component Analysis*

Site Frequency Spectrum*

Thetas Estimation*