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Merge pull request #6 from mokztk/devel/4.0.3
[Devel/4.0.3] 4.0.3_update2104
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,283 @@ | ||
| --- | ||
| title: "RStudioイメージ検証" | ||
| date: "`r Sys.Date()`" | ||
| output: | ||
| html_document: | ||
| toc: true | ||
| toc_depth: 3 | ||
| toc_float: true | ||
| df_print: kable | ||
| --- | ||
|
|
||
| ```{r setup, include = FALSE} | ||
| library(tidyverse) | ||
| # レポート全体の共通設定 | ||
| knitr::opts_chunk$set( | ||
| comment = NA, | ||
| tidy = TRUE, | ||
| echo = FALSE, | ||
| warning = FALSE, | ||
| message = FALSE | ||
| ) | ||
| ``` | ||
|
|
||
| ```{css, echo = FALSE} | ||
| /* タイトル部分 */ | ||
| div#header { | ||
| border: solid thin #444; | ||
| padding-left: 1em; | ||
| margin-bottom: 1em; | ||
| } | ||
| /* 見出しレベル2 (##) */ | ||
| h2 { | ||
| border-bottom: solid 3px #ccc; | ||
| } | ||
| div.level2 { | ||
| margin-top: 1em; | ||
| } | ||
| /* 表を縞にする */ | ||
| tr:nth-child(even) { | ||
| background-color: #eee; | ||
| } | ||
| tr:nth-child(odd) { | ||
| background-color: white; | ||
| } | ||
| /* 印刷用の設定 */ | ||
| @media print { | ||
| /* 印刷時の表の改ページ関係 */ | ||
| thead { | ||
| display: table-header-group; | ||
| } | ||
| /* 印刷時にリンクの後ろにURLを付けない */ | ||
| a[href]:after { | ||
| content: ""; | ||
| } | ||
| /* 印刷時に [Code] ボタンを消す */ | ||
| button.code-folding-btn { | ||
| display: none; | ||
| } | ||
| /* 目次は印刷しない */ | ||
| #TOC { | ||
| display: none; | ||
| } | ||
| } | ||
| ``` | ||
|
|
||
| ## Memo | ||
|
|
||
| <form> | ||
| <textarea class="form-control" rows="5"> | ||
| 【検証者】 | ||
| 【Host OS】 | ||
| 【Docker version】 | ||
| 【備考】 | ||
| </textarea> | ||
| </form> | ||
|
|
||
|
|
||
| ## Platform Info | ||
|
|
||
| ```{r platform} | ||
| sessioninfo::platform_info() %>% | ||
| imap_dfr(~ c(setting = .y, value = .x)) | ||
| ``` | ||
|
|
||
| **Default font :** `r system("fc-match", intern = TRUE)` | ||
|
|
||
| \newpage | ||
|
|
||
| ## Package Info | ||
|
|
||
| ```{r chk_package_load, cache = TRUE} | ||
| # 開始時に読み込まれているパッケージのリスト | ||
| base_list <- search() | ||
| # パッケージのロードを試みて結果を返す関数 | ||
| fun_chk_package_load <- function(pkg) { | ||
| temp <- tryCatch( | ||
| # 極力メッセージが表示されないようにパッケージを読み込む | ||
| suppressMessages( | ||
| library(pkg, character.only = TRUE, quietly = TRUE) | ||
| ), | ||
| # Warning, Error の場合はその内容を返す。改行はスペースに置換 | ||
| warning = function(w) { | ||
| return(c("Warning", gsub("\n", " ", w$message))) | ||
| }, | ||
| error = function(e) { | ||
| return(c("Error", gsub("\n", " ", e$message))) | ||
| } | ||
| ) | ||
| # 初期状態と比較して、新しくロードされたものを detach() する | ||
| sapply(setdiff(search(), base_list), | ||
| function(p) detach(pos = match(p, search()))) | ||
| # パッケージのロード成功の場合は "ok"、失敗時はエラーメッセージを返す | ||
| if (pkg %in% temp) { | ||
| return(c(result = "ok", message = "-")) | ||
| } else { | ||
| return(c(result = temp[1], message = temp[2])) | ||
| } | ||
| } | ||
| # インストールされている全パッケージについてテスト | ||
| res_df <- .packages(all.available = TRUE) %>% | ||
| sessioninfo::package_info(pkgs = ., include_base = TRUE) %>% | ||
| as_tibble() %>% | ||
| select(package, ondiskversion, date, source) %>% | ||
| mutate( | ||
| chk_loading = map(package, ~ do.call(what = fun_chk_package_load, args = list(pkg = .))), | ||
| result = map_chr(chk_loading, ~ .[1]), | ||
| result = fct_relevel(result, c("Error", "Warning", "ok")), | ||
| message = map_chr(chk_loading, ~ .[2]) | ||
| ) %>% | ||
| select(-chk_loading) | ||
| ``` | ||
|
|
||
| ```{r save_csv, eval = FALSE, include = FALSE} | ||
| # 保存 | ||
| res_df %>% | ||
| # 並べ替え | ||
| arrange(result, package) %>% | ||
| # 文字化け対策 | ||
| mutate( | ||
| message = str_replace_all(message, "(‘|’)", "'") | ||
| ) %>% | ||
| # 出力 | ||
| write.csv( | ||
| file = "~/library_test.csv", | ||
| quote = TRUE, fileEncoding = "cp932" | ||
| ) | ||
| ``` | ||
|
|
||
| ### 読み込み時 Error (`r sum(res_df$result == "Error")`) | ||
|
|
||
| ```{r pkg_w_error} | ||
| res_df %>% | ||
| filter(result == "Error") %>% | ||
| select(package, message) %>% | ||
| knitr::kable(format = "simple") | ||
| # knitr::kable(col.names = c("package_name", "")) | ||
| ``` | ||
|
|
||
| ### 読み込み時 Warning (`r sum(res_df$result == "Warning")`) | ||
|
|
||
| ```{r pkg_w_warn} | ||
| res_df %>% | ||
| filter(result == "Warning") %>% | ||
| select(package, message) %>% | ||
| knitr::kable(format = "simple") | ||
| # knitr::kable(col.names = c("package_name", "")) | ||
| ``` | ||
|
|
||
| ### インストール済すべて (`r nrow(res_df)`) | ||
|
|
||
| ```{r pkg_version} | ||
| res_df %>% | ||
| select(package, ondiskversion, date, source) %>% | ||
| knitr::kable(format = "simple") | ||
| ``` | ||
|
|
||
| \newpage | ||
|
|
||
| ## TinyTeX | ||
|
|
||
| ```{r tinytex, results = "asis"} | ||
| if ("tinytex" %in% .packages(all.available = TRUE)) { | ||
| tryCatch( | ||
| { | ||
| tinytex::tlmgr("version", stdout = TRUE) %>% | ||
| paste(collapse = "\n") %>% | ||
| paste(tinytex::tlmgr_repo(stdout = TRUE), sep = "\n\n") %>% | ||
| paste("", "```", ., "```", sep = "\n") %>% | ||
| append("**{tinytex} パッケージのインストールが完了しています。**<br>", .) %>% | ||
| cat() | ||
| }, | ||
| warning = function(w) { | ||
| cat("**{tinytex} パッケージはありますが、インストールが完了していません。**") | ||
| # return(gsub('\\n', '', w$message)) | ||
| } | ||
| ) | ||
| } else { | ||
| cat("**{tinytex} パッケージがありません。**") | ||
| } | ||
| ``` | ||
|
|
||
| ### インストール済のTeXパッケージ | ||
| ```{r tinytex_packages} | ||
| if ("tinytex" %in% .packages(all.available = TRUE)) { | ||
| tryCatch( | ||
| { | ||
| tinytex::tlmgr("list --only-installed", stdout = TRUE) %>% | ||
| tibble(plist = .) %>% | ||
| mutate( | ||
| package = map_chr(plist, ~ gsub("^i\ ([^:]+):.*", "\\1", .)), | ||
| description = map_chr(plist, ~ gsub("^i\ .+:\ (.+)", "\\1", .)) | ||
| ) %>% | ||
| select(-plist) %>% | ||
| knitr::kable(format = "simple") | ||
| }, | ||
| warning = function(w) { | ||
| return(gsub("\\n", "", w$message)) | ||
| } | ||
| ) | ||
| } | ||
| ``` | ||
|
|
||
| \newpage | ||
|
|
||
| ## Python & {reticulate} | ||
|
|
||
| ```{r chk_reticulate, results = "asis"} | ||
| if ("reticulate" %in% .packages(all.available = TRUE)) { | ||
| cat("**{reticulate} がインストールされています。**\n") | ||
| reticulate::py_config() %>% | ||
| capture.output() %>% | ||
| paste(collapse = "\n") %>% | ||
| paste("```", ., "```", sep = "\n") %>% | ||
| cat() | ||
| } else { | ||
| cat("**{reticulate} がインストールされていません。**") | ||
| cat("<br><br>システムのpythonは<br>") | ||
| tryCatch( | ||
| { | ||
| system("python --version && which python", intern = TRUE) %>% | ||
| paste(collapse = "\n") %>% | ||
| paste("", "```", ., "```", sep = "\n") %>% | ||
| cat() | ||
| }, | ||
| warning = function(w) { | ||
| paste("", "```", w$message, "```", sep = "\n") %>% cat() | ||
| }, | ||
| error = function(e) { | ||
| paste("", "```", e$message, "```", sep = "\n") %>% cat() | ||
| }) | ||
| } | ||
| ``` | ||
|
|
||
| ### pip list --freeze | ||
|
|
||
| ```{r chk_pip_pkgs, results = "asis"} | ||
| tryCatch( | ||
| { | ||
| system("python -m pip list -freeze", intern = TRUE) %>% | ||
| paste(collapse = "\n") %>% | ||
| cat() | ||
| }, | ||
| warning = function(w) { | ||
| w$message | ||
| }, | ||
| error = function(e) { | ||
| e$message | ||
| }) | ||
| ``` |
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