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VCF index not created with HTSlib doesn't work #436

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dennishendriksen opened this issue Jul 25, 2023 · 0 comments
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VCF index not created with HTSlib doesn't work #436

dennishendriksen opened this issue Jul 25, 2023 · 0 comments
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@dennishendriksen
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VCF index created via HTSlib (e.g. BCFtools) adds metadata to the index that is used by bcftools index --stats (context here). This information might not be available when the index is created with other tools, e.g. PyVCF.
@dennishendriksen dennishendriksen added the bug Something isn't working label Jul 25, 2023
dennishendriksen added a commit that referenced this issue Jul 27, 2023
@dennishendriksen
M10277 Subworkflows & stubs (fix #405, fix #418, fix #419, fix #423, fix
98c890d 
 #428, fix #430, fix #435, fix #436, fix #437, fix #438, fix #439)
bartcharbon added a commit that referenced this issue Aug 14, 2023
@bartcharbon
Merge pull request #416 from molgenis/fix/cram_empty_contigs
df064ed 
M10277 Subworkflows & stubs (fix #405, fix #418, fix #419, fix #423, fix   #428, fix #430, fix #435, fix #436, fix #437, fix #438, fix #439)
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