Merge pull request #12 from TheJacksonLaboratory/release-v1.0.0-RC2

Release v1.0.0 rc2

CHANGELOG.md

@@ -1,8 +1,37 @@
 # Changelog
 
+## ✈ the latest
+
+## ✈ v1.0.0-RC2
+- `squirls-cli`
+  - implement commands `annotate-csv`, `annotate-vcf`, and `annotate-pos`
+  - prettify the HTML report produced by `analyze-vcf` command
+- `squirls-core`
+  - performance improvements, increase test coverage
+  - improve handling of positions with missing conservation scores
+
+## ✈ v1.0.0-RC1
+- `squirls-core`
+  - implement the final prediction model
+  - include AGEZ features
+  - use full logistic regression (not *max*-dependent)
+  - simplify dependencies  
+- `squirls-ingest`
+  - optimize the database building process
+  - include PhyloP bigwig file into data directory
+- `squirls-spring-boot-autoconfigure`
+  - improve error reporting 
+  - include PhyloP into autoconfiguration
+
+---
+**The versions below were used in development only, and they are not available anymore. 
+Please see `VERSIONING.md` to see the details regarding the new versioning scheme** 
+
 ## v1.3.0
 ✈ re-brand to Squirls, restructure code
+
 ✈ implement prototype SVG graphics generation using VMVT
+
 ✈ add splicing features 
 
 ## v1.2.0

HOW_TO_RELEASE.md

@@ -0,0 +1,7 @@
+# How to release
+
+Release checklist items:
+- update `CHANGELOG.md`
+- update version in: 
+  - `pom.xml`
+  - documentation