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v1.0.0-RC4

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@ielis ielis released this 18 Feb 02:28
· 132 commits to master since this release

Squirls

  • make the code repository public, enable Read the Docs integration
    squirls-cli
  • finalize the HTML report and SVG graphics layout
  • allow writing results in multiple result formats, including VCF, TSV/CSV
  • report positions of candidate cryptic variants
  • add distribution zip
    squirls-core
  • use apiguardian-api to label the API elements
  • use svart v1.0.0 to represent variants, genomic regions, and the other genomic coordinates
  • remove external dependencies such as JBlas,
    squirls-ingest
  • download genomic assembly report
  • calculate SHA256 checksums
  • replace argparse4j by picocli
    squirls-io
  • create the module for handling creation of Squirls structures
    squirls-spring-boot-autoconfigure
  • fix bug involving database initialization in HPC environments