Merge pull request #245 from TheJacksonLaboratory/add-data-release-2402

Add `2402` data release
monarch-initiative · Feb 29, 2024 · 79ef274 · 79ef274
2 parents 1ac346b + 21d34b9
commit 79ef274
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Showing 13 changed files with 26 additions and 19 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'1.0'
+version = u'1.1'
 # The full version, including alpha/beta/rc tags.
-release = u'1.0.4'
+release = u'1.1.0-SNAPSHOT'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/downloads.rst b/docs/downloads.rst
@@ -6,12 +6,19 @@ Downloads
 
 SvAnna database files are available for download from the following locations:
 
-=========  ==============  ============================================================  =============================================
- Version    Genome build                           URL                                                      Size
-=========  ==============  ============================================================  =============================================
- 2204       hg38/GRCh38     https://storage.googleapis.com/svanna/2204_hg38.svanna.zip      ~627 MB for download, ~2.3 GB unpacked
- 2304       hg38/GRCh38     https://storage.googleapis.com/svanna/2304_hg38.svanna.zip      ~674 MB for download, ~2.6 GB unpacked
-=========  ==============  ============================================================  =============================================
+=========  ================ ==============  ============================================================  =============================================
+ Version    Compatibility    Genome build                           URL                                                      Size
+=========  ================ ==============  ============================================================  =============================================
+ 2204       [1.0.0, 1.0.3)   hg38/GRCh38     https://storage.googleapis.com/svanna/2204_hg38.svanna.zip      ~627 MB for download, ~2.3 GB unpacked
+ 2304       [1.0.3, 1.1.0)   hg38/GRCh38     https://storage.googleapis.com/svanna/2304_hg38.svanna.zip      ~674 MB for download, ~2.6 GB unpacked
+ 2402       [1.1.0, latest)  hg38/GRCh38     https://storage.googleapis.com/svanna/2402_hg38.svanna.zip      ~648 MB for download, ~2.1 GB unpacked
+=========  ================ ==============  ============================================================  =============================================
+
+.. note::
+
+  The *Compatibility* column indicates the SvAnna application version that is compatible
+  with given database files *Version*. The bracket `[` is inclusive while `)` is exclusive.
+  For instance version `2304` works with SvAnna versions `1.0.3` and `1.0.4` but *not* with `1.1.0`.
 
 Use ``curl`` or ``wget`` utilities to download the files from command line::
 

diff --git a/pom.xml b/pom.xml
@@ -16,7 +16,7 @@
         <module>svanna-benchmark</module>
     </modules>
     <groupId>org.monarchinitiative.svanna</groupId>
-    <version>1.0.5-SNAPSHOT</version>
+    <version>1.1.0-SNAPSHOT</version>
     <name>SvAnna</name>
 
     <parent>

diff --git a/svanna-benchmark/pom.xml b/svanna-benchmark/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-cli/pom.xml b/svanna-cli/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
     <artifactId>svanna-cli</artifactId>

diff --git a/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java b/svanna-cli/src/main/java/org/monarchinitiative/svanna/cli/Main.java
@@ -17,7 +17,7 @@
         footer = Main.FOOTER)
 public class Main implements Callable<Integer>  {
 
-    public static final String VERSION = "svanna-cli v1.0.5-SNAPSHOT";
+    public static final String VERSION = "svanna-cli v1.1.0-SNAPSHOT";
 
     public static final int WIDTH = 120;
 

diff --git a/svanna-configuration/pom.xml b/svanna-configuration/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-core/pom.xml b/svanna-core/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-db/pom.xml b/svanna-db/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-ingest/pom.xml b/svanna-ingest/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
     <artifactId>svanna-ingest</artifactId>

diff --git a/svanna-io/pom.xml b/svanna-io/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-model/pom.xml b/svanna-model/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/svanna-test/pom.xml b/svanna-test/pom.xml
@@ -3,7 +3,7 @@
     <parent>
         <artifactId>SvAnna</artifactId>
         <groupId>org.monarchinitiative.svanna</groupId>
-        <version>1.0.5-SNAPSHOT</version>
+        <version>1.1.0-SNAPSHOT</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>